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[ CAS No. 838-07-3 ] {[proInfo.proName]}

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Cat. No.: {[proInfo.prAm]}
Chemical Structure| 838-07-3
Chemical Structure| 838-07-3
Structure of 838-07-3 * Storage: {[proInfo.prStorage]}

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Product Details of [ 838-07-3 ]

CAS No. :838-07-3 MDL No. :
Formula : C10H15N3O4 Boiling Point : No data available
Linear Structure Formula :HOCH2C4H5OOHC4HCH3N2ONH2 InChI Key :LUCHPKXVUGJYGU-XLPZGREQSA-N
M.W : 241.24 Pubchem ID :440055
Synonyms :
5-Methyldeoxycytidine
Chemical Name :4-Amino-1-((2R,4S,5R)-4-hydroxy-5-(hydroxymethyl)tetrahydrofuran-2-yl)-5-methylpyrimidin-2(1H)-one

Calculated chemistry of [ 838-07-3 ]      Expand+

Physicochemical Properties

Num. heavy atoms : 17
Num. arom. heavy atoms : 6
Fraction Csp3 : 0.6
Num. rotatable bonds : 2
Num. H-bond acceptors : 5.0
Num. H-bond donors : 3.0
Molar Refractivity : 59.65
TPSA : 110.6 ?2

Pharmacokinetics

GI absorption : High
BBB permeant : No
P-gp substrate : No
CYP1A2 inhibitor : No
CYP2C19 inhibitor : No
CYP2C9 inhibitor : No
CYP2D6 inhibitor : No
CYP3A4 inhibitor : No
Log Kp (skin permeation) : -8.77 cm/s

Lipophilicity

Log Po/w (iLOGP) : 0.99
Log Po/w (XLOGP3) : -1.4
Log Po/w (WLOGP) : -1.54
Log Po/w (MLOGP) : -1.2
Log Po/w (SILICOS-IT) : -0.9
Consensus Log Po/w : -0.81

Druglikeness

Lipinski : 0.0
Ghose : None
Veber : 0.0
Egan : 0.0
Muegge : 0.0
Bioavailability Score : 0.55

Water Solubility

Log S (ESOL) : -0.58
Solubility : 63.0 mg/ml ; 0.261 mol/l
Class : Very soluble
Log S (Ali) : -0.42
Solubility : 91.5 mg/ml ; 0.379 mol/l
Class : Very soluble
Log S (SILICOS-IT) : -0.18
Solubility : 159.0 mg/ml ; 0.658 mol/l
Class : Soluble

Medicinal Chemistry

PAINS : 0.0 alert
Brenk : 0.0 alert
Leadlikeness : 1.0
Synthetic accessibility : 3.67

Safety of [ 838-07-3 ]

Signal Word:Warning Class:
Precautionary Statements:P261-P305+P351+P338 UN#:
Hazard Statements:H302-H315-H319-H335 Packing Group:
GHS Pictogram:

Application In Synthesis of [ 838-07-3 ]

* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.

  • Upstream synthesis route of [ 838-07-3 ]
  • Downstream synthetic route of [ 838-07-3 ]

[ 838-07-3 ] Synthesis Path-Upstream   1~16

  • 1
  • [ 50-89-5 ]
  • [ 838-07-3 ]
YieldReaction ConditionsOperation in experiment
92%
Stage #1: With 1,8-diazabicyclo[5.4.0]undec-7-ene; ((3H-[1,2,3]triazolo[4,5-b]pyridin-3-yl)oxy)tri(pyrrolidin-1-yl)phosphonium hexafluorophosphate(V) In N,N-dimethyl-formamide at 20℃; for 0.0166667 h;
Stage #2: With ammonium hydroxide In N,N-dimethyl-formamide at 20℃; for 2 h;
General procedure: To a solution of the nucleosides (2–20) in DMF ([substrate]=0.3M, except for 3 and 4, [3,4]=0.05M) were added PyAOP (1.6 eq) and DBU (1.6 eq). The reaction was stirred at 20°C for 1min. To the reaction solution was added N-nucleophiles (4 eq) (or 1a in THF, conc. NH4OH (10 eq)). The reaction was stirred at 20°C for 5min?4h and monitored by TLC. Upon completion, the solution was concentrated in vacuo. Flash column chromatography on silica gel afforded 5MedC and oxidized 5MedC derivatives (1′–20′) in pure form.
Reference: [1] Tetrahedron, 2018, vol. 74, # 49, p. 7095 - 7101
[2] Nucleosides and Nucleotides, 1996, vol. 15, # 4, p. 907 - 921
[3] Journal of the American Chemical Society, 1959, vol. 81, p. 178,187
  • 2
  • [ 115652-25-0 ]
  • [ 838-07-3 ]
Reference: [1] Tetrahedron, 1996, vol. 52, # 19, p. 6759 - 6780
[2] Journal of the Chemical Society, Perkin Transactions 1: Organic and Bio-Organic Chemistry (1972-1999), 1994, # 21, p. 3053 - 3054
  • 3
  • [ 80991-41-9 ]
  • [ 838-07-3 ]
Reference: [1] Journal of the Chemical Society, Chemical Communications, 1981, # 20, p. 1089
  • 4
  • [ 80991-42-0 ]
  • [ 838-07-3 ]
Reference: [1] Angewandte Chemie - International Edition, 2010, vol. 49, # 31, p. 5375 - 5377
  • 5
  • [ 93841-35-1 ]
  • [ 838-07-3 ]
Reference: [1] Journal of the American Chemical Society, 1959, vol. 81, p. 178,187
[2] Biochemical Preparations, 1963, vol. 10, p. 98,102
  • 6
  • [ 3226-65-1 ]
  • [ 951-77-9 ]
  • [ 838-07-3 ]
Reference: [1] Bioorganic and Medicinal Chemistry Letters, 2010, vol. 20, # 1, p. 260 - 265
  • 7
  • [ 67-68-5 ]
  • [ 951-77-9 ]
  • [ 838-07-3 ]
Reference: [1] Bioorganic and Medicinal Chemistry Letters, 2010, vol. 20, # 1, p. 260 - 265
  • 8
  • [ 50-89-5 ]
  • [ 838-07-3 ]
Reference: [1] Gazzetta Chimica Italiana, 1983, vol. 113, # 11/12, p. 863 - 864
  • 9
  • [ 35898-30-7 ]
  • [ 838-07-3 ]
Reference: [1] Journal of the American Chemical Society, 1959, vol. 81, p. 178,187
  • 10
  • [ 20188-74-3 ]
  • [ 838-07-3 ]
Reference: [1] Tetrahedron, 1996, vol. 52, # 19, p. 6759 - 6780
[2] Journal of the Chemical Society, Perkin Transactions 1: Organic and Bio-Organic Chemistry (1972-1999), 1994, # 21, p. 3053 - 3054
  • 11
  • [ 176755-83-2 ]
  • [ 838-07-3 ]
Reference: [1] Nucleosides and Nucleotides, 1997, vol. 16, # 7-9, p. 1271 - 1278
[2] Indian Journal of Chemistry - Section B Organic and Medicinal Chemistry, 1997, vol. 36, # 6, p. 519 - 524
[3] Indian Journal of Chemistry - Section A Inorganic, Physical, Theoretical and Analytical Chemistry, 1997, vol. 36, # 6, p. 519 - 524
  • 12
  • [ 10457-18-8 ]
  • [ 838-07-3 ]
Reference: [1] Nucleosides and Nucleotides, 1996, vol. 15, # 4, p. 907 - 921
  • 13
  • [ 6979-97-1 ]
  • [ 838-07-3 ]
Reference: [1] Journal of the Chemical Society, Chemical Communications, 1981, # 20, p. 1089
  • 14
  • [ 91290-54-9 ]
  • [ 838-07-3 ]
Reference: [1] Gazzetta Chimica Italiana, 1983, vol. 113, # 11/12, p. 863 - 864
  • 15
  • [ 6979-97-1 ]
  • [ 838-07-3 ]
Reference: [1] Gazzetta Chimica Italiana, 1983, vol. 113, # 11/12, p. 863 - 864
  • 16
  • [ 2498-41-1 ]
  • [ 838-07-3 ]
Reference: [1] Journal of Biological Chemistry, 1957, vol. 226, p. 631,633
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