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Discovery of Polyphenolic Natural Products as SARS-CoV-2 Mpro Inhibitors for COVID-19
Krueger, Nadine ; Kronenberger, Thales ; Xie, Hang , et al. Pharmaceuticals,2023,16(2):190. DOI: 10.3390/ph16020190 PubMed ID: 37259339
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Abstract: The severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) has forced the development of direct-acting antiviral drugs due to the coronavirus disease 2019 (COVID-19) pandemic. The main protease of SARS-CoV-2 is a crucial enzyme that breaks down polyproteins synthesized from the viral RNA, making it a validated target for the development of SARS-CoV-2 therapeutics. New chem. phenotypes are frequently discovered in natural goods. In the current study, we used a fluorogenic assay to test a variety of natural products for their ability to inhibit SARS-CoV-2 Mpro. Several compounds were discovered to inhibit Mpro at low micromolar concentrations It was possible to crystallize robinetin together with SARS-CoV-2 Mpro, and the X-ray structure revealed covalent interaction with the protease's catalytic Cys145 site. Selected potent mols. also exhibited antiviral properties without cytotoxicity. Some of these powerful inhibitors might be utilized as lead compounds for future COVID-19 research.
Keywords: COVID-19 ; antivirals ; coronavirus ; covalent drugs ; dynamic light scattering ; inhibitors ; main protease ; natural products
Purchased from AmBeed: 20554-84-1 ; 18524-94-2 ; 568-73-0 ; 989-51-5 ; 484-12-8 ; 86404-04-8 ; 491-70-3 ; 2752-65-0 ; 6147-11-1 ; 10083-24-6 ; 50-81-7 ; 2752-65-0 ; 522-12-3 ; 529-44-2 ; 529-53-3 ; 546-43-0 ; 501-36-0 ; 28957-04-2 ; 4674-50-4 ; 477-43-0 ; 553-21-9 ; 96829-58-2 ; 96574-01-5 ; 20283-92-5 ; 490-31-3 ; 17912-87-7 ; 520-31-0 ; 86404-04-8 ...More
CAS No. : | 546-43-0 | MDL No. : | MFCD00046915 |
Formula : | C15H20O2 | Boiling Point : | - |
Linear Structure Formula : | - | InChI Key : | - |
M.W : | 232.32 | Pubchem ID : | - |
Synonyms : |
Alant camphor;Inula camphor;AI3-31147;NSC 93131;NSC 333843;helenine;helenin;(+)-Alantolactone
|
Chemical Name : | (3aR,5S,8aR,9aR)-5,8a-Dimethyl-3-methylene-3,3a,6,7,8,8a,9,9a-octahydronaphtho[2,3-b]furan-2(5H)-one |
Signal Word: | Warning | Class: | N/A |
Precautionary Statements: | P261-P280 | UN#: | N/A |
Hazard Statements: | H317 | Packing Group: | N/A |
GHS Pictogram: |
* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
94% | With Perbenzoic acid; In dichloromethane; at 20℃; for 3h; | <strong>[546-43-0]Alantolactone</strong> (2.0g, 8.6mmol) was dissolved in dichloromethane (10mL),To the above system was slowly added dropwise a solution of peroxybenzoic acid (2.1 g, 10.3 mmol) in dichloromethane (20 mL)Reaction at room temperature for 3 hours,Saturated aqueous sodium thiosulfate solution was quenched,The organic layer was washed with saturated aqueous sodium bicarbonate (20 mL x 3)Dry and concentrate,Purification by column chromatography (petroleum ether: ethyl acetate = 5: 2) gave Compound (I-III) (White solid, 2.0 g, yield 94%) |
94% | With Perbenzoic acid; In dichloromethane; at 20℃; for 3h; | <strong>[546-43-0]Alantolactone</strong> (2.0g, 8.6mmol) was dissolved in dichloromethane (10mL),To the above system was slowly added dropwise a solution of peroxybenzoic acid (2.1 g, 10.3 mmol) in dichloromethane (20 mL)Reaction at room temperature for 3 hours,Saturated aqueous sodium thiosulfate solution was quenched,The organic layer was washed with saturated aqueous sodium bicarbonate (20 mL x 3)Dry and concentrate,Purification by column chromatography (petroleum ether: ethyl acetate = 5: 2) gave Compound (I-III) (White solid, 2.0 g, yield 94%) |
94% | With Perbenzoic acid; In dichloromethane; at 20℃; for 3h; | <strong>[546-43-0]Alantolactone</strong> (2.0 g, 8.6 mmol) was dissolved in dichloromethane (10 mL).Slowly add peroxybenzoic acid (2.1 g, 10.3 mmol) to the above systema solution of dichloromethane (20 mL),Reaction at room temperature for 3 hours,Saturated aqueous sodium thiosulfate quenches the reaction,Organic layer saturatedWash with aqueous sodium bicarbonate solution (20 mL × 3),Dry and concentrated,Purification by column chromatography (petroleum ether:ethyl acetate=5:2) to give compound (I-III)(white solid, 2.0 g, yield 94%) |
90% | With 3-chloro-benzenecarboperoxoic acid; In dichloromethane; at 20℃; for 3h; | <strong>[546-43-0]Alantolactone</strong>(2.0 g, 8.6 mmol) was dissolved in CH2Cl2 (10 mL). m-CPBA(2.1 g, 10 mmol) in dichloromethane (10 mL) was added dropwiseto this solution. The mixture was stirred at room temperature for3 h. Then the reaction mixture was diluted with 30 mL saturatedNa2S2O3 solution, washed with saturated NaHCO3 solution, driedover anhydrous Na2SO4, filtered, and evaporated to afford a crudeproduct, which was purified by column chromatography [petroleumetherEtOAc (5:2)] to obtain compound 3 as a white solid(1.9 g, 90%). mp 164-166 C. 1H NMR (400 MHz, CDCl3) delta (ppm) 6.40(s, 1H), 5.77 (s, 1H), 4.78e4.55 (m, 1H), 3.66 (dt, J 8.9, 2.8 Hz, 1H),2.89 (d, J 2.5 Hz, 1H), 1.92-1.64 (m, 3H), 1.59-1.28 (m, 6H), 1.11 (s,3H), 1.04 (dd, J 7.8, 2.1 Hz, 3H). 13C NMR (100 MHz, CDCl3) delta (ppm)169.5, 136.6, 123.6, 75.0, 67.4, 61.1, 39.4, 37.6, 37.3, 37.0, 32.5, 29.4,23.8, 18.0, 16.4. HR-MS (ESI) m/z: calcd for C15H20O3Na [M Na]271.1305, found 271.1306. |