Structure of 39745-40-9
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CAS No. : | 39745-40-9 |
Formula : | C6H7ClN2 |
M.W : | 142.59 |
SMILES Code : | C1=CC(=NC(=C1N)Cl)C |
MDL No. : | MFCD03095213 |
InChI Key : | SUMSBUDMYMYTLL-UHFFFAOYSA-N |
Pubchem ID : | 2734415 |
GHS Pictogram: |
![]() |
Signal Word: | Warning |
Hazard Statements: | H302+H312+H332-H315-H319-H335 |
Precautionary Statements: | P261-P280-P305+P351+P338 |
Num. heavy atoms | 9 |
Num. arom. heavy atoms | 6 |
Fraction Csp3 | 0.17 |
Num. rotatable bonds | 0 |
Num. H-bond acceptors | 1.0 |
Num. H-bond donors | 1.0 |
Molar Refractivity | 38.62 |
TPSA ? Topological Polar Surface Area: Calculated from |
38.91 ?2 |
Log Po/w (iLOGP)? iLOGP: in-house physics-based method implemented from |
1.51 |
Log Po/w (XLOGP3)? XLOGP3: Atomistic and knowledge-based method calculated by |
1.53 |
Log Po/w (WLOGP)? WLOGP: Atomistic method implemented from |
1.63 |
Log Po/w (MLOGP)? MLOGP: Topological method implemented from |
0.75 |
Log Po/w (SILICOS-IT)? SILICOS-IT: Hybrid fragmental/topological method calculated by |
1.74 |
Consensus Log Po/w? Consensus Log Po/w: Average of all five predictions |
1.43 |
Log S (ESOL):? ESOL: Topological method implemented from |
-2.18 |
Solubility | 0.939 mg/ml ; 0.00659 mol/l |
Class? Solubility class: Log S scale |
Soluble |
Log S (Ali)? Ali: Topological method implemented from |
-1.96 |
Solubility | 1.58 mg/ml ; 0.0111 mol/l |
Class? Solubility class: Log S scale |
Very soluble |
Log S (SILICOS-IT)? SILICOS-IT: Fragmental method calculated by |
-2.64 |
Solubility | 0.324 mg/ml ; 0.00227 mol/l |
Class? Solubility class: Log S scale |
Soluble |
GI absorption? Gatrointestinal absorption: according to the white of the BOILED-Egg |
High |
BBB permeant? BBB permeation: according to the yolk of the BOILED-Egg |
Yes |
P-gp substrate? P-glycoprotein substrate: SVM model built on 1033 molecules (training set) |
No |
CYP1A2 inhibitor? Cytochrome P450 1A2 inhibitor: SVM model built on 9145 molecules (training set) |
No |
CYP2C19 inhibitor? Cytochrome P450 2C19 inhibitor: SVM model built on 9272 molecules (training set) |
No |
CYP2C9 inhibitor? Cytochrome P450 2C9 inhibitor: SVM model built on 5940 molecules (training set) |
No |
CYP2D6 inhibitor? Cytochrome P450 2D6 inhibitor: SVM model built on 3664 molecules (training set) |
No |
CYP3A4 inhibitor? Cytochrome P450 3A4 inhibitor: SVM model built on 7518 molecules (training set) |
No |
Log Kp (skin permeation)? Skin permeation: QSPR model implemented from |
-6.08 cm/s |
Lipinski? Lipinski (Pfizer) filter: implemented from |
0.0 |
Ghose? Ghose filter: implemented from |
None |
Veber? Veber (GSK) filter: implemented from |
0.0 |
Egan? Egan (Pharmacia) filter: implemented from |
0.0 |
Muegge? Muegge (Bayer) filter: implemented from |
1.0 |
Bioavailability Score? Abbott Bioavailability Score: Probability of F > 10% in rat |
0.55 |
PAINS? Pan Assay Interference Structures: implemented from |
0.0 alert |
Brenk? Structural Alert: implemented from |
1.0 alert: heavy_metal |
Leadlikeness? Leadlikeness: implemented from |
No; 1 violation:MW<1.0 |
Synthetic accessibility? Synthetic accessibility score: from 1 (very easy) to 10 (very difficult) |
1.53 |
* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
31% | With sodium hydrogencarbonate; In water; acetonitrile; | a 5-Bromo-2-chloro-N-(6-chloro-2-methyl-3-pyridinyl)-3-pyridinecarboxamide NaHCO3 (3.9 g, 46.4 mmol) was added to a solution of <strong>[39745-40-9]3-amino-2-chloro-6-methylpyridine</strong> (2.2 g, 15.4 mmol; prepared as described by K. G. Grozinger et al. J. Heterocyclic Chem. 1995, 32, 259-263) in MeCN (50 mL). The resulting suspension was stirred for 15 min. and a solution of crude 5-bromo-2-chloro-3-pyridinecarbonyl chloride (prepared from 5-bromo-2-hydroxy-3-pyridinecarboxylic acid and SOCl2 [as described by T. W. Gero et al. in Synth. Commun. 1989, 19, 553-559 (incorporated herein by reference) but with omission of the aqueous work-up] (4 g,) in MeCN (10 mL) was introduced over 30 min. The resulting suspension was stirred at room temperature. After 24 h, the mixture was poured into a mixture of water (100 mL) and ice (10 g) and stirred for 20 min. The suspension was filtered and the resulting solid was washed with water (50 mL) and hexane (25 mL), then dried over P2O5 under reduced pressure to give the title compound (1.8 g, 31percent yield) as a white powder. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
17.9 g (95%) | In dichloromethane; | Preparation 42 Diethyl 2-(((2-Chloro-6-methyl-3-pyridinyl)amino)methylene) malonate [BT.2] A mixture of 2-chloro-6-methyl-3-pyridinylamine (8.5 g) and diethyl ethoxy-methylenemalonate (22.0 mL) is heated at 140° C. for 18 hours. The mixture is cooled to room temperature and the resulting solids are recrystallized from a mixture of heptane (400 mL) and CH2Cl2 (2 mL) to obtain 17.9 g (95percent) of the title compound as a pale red solid. Physical characteristics: MS (ESI+) m/z 313 (M+H). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
A. 3-Amino-N-(5-chloropyridin-2-yl)-6-methylpyridine-2-carboxamide. Using methods substantially equivalent to those described in Example 2-A, 3-amino-N-(5-chloropyridin-2-yl)-6-methylpyridine-2-carboxamide (16 g, 46percent) was prepared from <strong>[39745-40-9]3-amino-2-chloro-6-methylpyridine</strong> and 2-amino-5-chloropyridine. 1H NMR FIA-MS, m/e 263.1 (m+1). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
100% | With sodium carbonate; In dichloromethane; at 20℃; | Example 180N-r4-r2,6-difluorophenoxy)pyridin-2-vpi-5-methylthiazolof5,4-b]pyridin-2- amine hydrochloride[00536]; Step A: Preparation of 2-chloro-3-isothiocvanato-6- methylpyridine : A solution of thiophosgene (3.871 g, 33.66 mmol) in dichloromethane (10 mL) was added to a mixture of 2-chloro-6-methylpyridin-3- amine (4.00 g, 28.05 mmol) and sodium carbonate (5.947 g, 56.11 mmol) in dichloromethane (200 mL). The reaction was stirred overnight at ambient temperature, then washed with water, brine, dried, and concentrated to afford the desired product (5.2 g, 100.4percent yield) as a tan powder. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With N-ethyl-N,N-diisopropylamine; In N,N-dimethyl-formamide;Heating / reflux; | Benzylchloride 3a4 (50 mg, 0.09 mmol) is combined with 3-amino-2-chloro-6- methylpyridine (20 mg, 1.4 mmol) and DIPEA (30 muL, 0.18 mmol) in DMF (1 mL). The mixture is heated to reflux and is stirred overnight. Tetrahydrofuran (1 mL), and MeOH (1 mL) are added followed by aqueous NaOH (1 N, 1 mL, 2.0 mmol) then the mixture is stirred at RT for about 14 hours. The mixture is acidified with AcOH and purified by preparative HPLC to isolate compound 1079. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
16% | With hydrogen bromide; In water; diethylene glycol; | PREPARATION 296-Methyl-N2-o-tolylpyridine-2,3-diamineAn aqueous solution of HBr (48percent) (2.7 mL) was added to a solution of <strong>[39745-40-9]2-chloro-6-methylpyridin-3-amine</strong> (3.00 g, 21.04 mmols) and o-toluidine (2.5 mL, 23.14 mmols) in diethylene glycol (42 mL).It was stirred at 180oC for 36h.It was concentrated in vacuo and it was extracted with ethyl acetate.The organic phase was washed with a saturated aqueous solution of NaHCO3, dried, filtered and concentrated in vacuo.It was purified by chromatography (Silica gel, Hexane:Ethyl acetate 0-20percent).The expected compound was obtained (0.8 6g, 16percent).LRMS (m/z): 314 (M+1)+1H NMR (400 MHz, CHLOROFORM-d) d ppm 2.16 (s, 3 H) 2.40 (s, 3 H) 6.67 (dd, 2 H) 6.82 - 7.00 (m, 2 H) 7.03 - 7.21 (m, 2 H) |
16% | An aqueous solution of HBr (48percent) (2.7 mL) was added to a solution of 2-chloro-6- methylpyridin-3-amine (3.00 g, 21.04 mmols) and o-toluidine (2.5 mL, 23.14 mmols) in diethylene glycol (42 mL). It was stirred at 180°C for 36h. It was concentrated in vacuum and it was extracted with ethyl acetate. The organic phase was washed with a saturated aqueous solution of NaHC03, dried, filtered and concentrated in vacuum. It was purified by chromatography (Silica gel, Hexane:Ethyl acetate 0-20percent). The expected compound was obtained (0.8 6g, 16percent).LRMS (m/z): 314 (M+1 )+1H NMR (400 MHz, CDCI3) delta ppm 2.16 (s, 3 H) 2.40 (s, 3 H) 6.67 (dd, 2 H) 6.82 - 7.00 (m, 2 H) 7.03 - 7.21 (m, 2 H) |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With (1,1'-bis(diphenylphosphino)ferrocene)palladium(II) dichloride; potassium carbonate; In 1,4-dioxane; water; at 80℃; for 18h; | A deoxygenated mixture of 2-chloi -6-methylpyridin-3-amine (200 mg, 1.56 mmol), phenylboronic acid (381 mg, 3.13 mmol), Pd(dppf Cl2 (5 mg, 0.007 mmol), and K2CO3 (646 mg, 4.68 mmol) in a 10: 1 mixture of 1 ,4-dioxane: water (33 mL) was heated at 80 °C for 18 h. The mixture was cooled and the organic layer was separated and washed with brine, dried over anhydrous Na2S04 and concentrated. The residue was further purified by TLC (PE: EtOAc = 2: 1 ) to give the title compound as a white solid. MS: m/z = 171 (M+H). | |
With (1,1'-bis(diphenylphosphino)ferrocene)palladium(II) dichloride; potassium carbonate; In 1,4-dioxane; water; at 80℃; for 18h; | Example of reaction scheme VII: Intermediate 46-Methyl-2-phenylpyridin-3-amineA deoxygenated mixture of 2-chloro-6-methylpyridin-3 -amine (200 mg, 1.56 mmol), phenylboronic acid (381 mg, 3.13 mmol), Pd(dppf)2Cl2(5 mg, 0.007 mmol), and K2C03(646 mg, 4.68 mmol) in a 10: 1 mixture of 1,4-dioxane: water (33 mL) was heated at 80 °C for 18 h. The mixture was cooled and the organic layer was separated and washed with brine, dried over anhydrous Na2S04and concentrated. The residue was further purified by TLC (PE: EtOAc = 2: 1) to give the title compound as a white solid. MS: m/z = 111 (M+H). |
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