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Chemical Structure| 35737-10-1 Chemical Structure| 35737-10-1
Chemical Structure| 35737-10-1

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CAS No.: 35737-10-1

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Fmoc-β-Ala-OH is an alanine derivative with a protecting group, commonly used in peptide synthesis and protein engineering.

4.5 *For Research Use Only !

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Product Details of Fmoc-β-Ala-OH

CAS No. :35737-10-1
Formula : C18H17NO4
M.W : 311.33
SMILES Code : O=C(O)CCNC(OCC1C2=CC=CC=C2C3=CC=CC=C13)=O
MDL No. :MFCD00063328
InChI Key :LINBWYYLPWJQHE-UHFFFAOYSA-N
Pubchem ID :2724630

Safety of Fmoc-β-Ala-OH

GHS Pictogram:
Signal Word:Warning
Hazard Statements:H315-H319-H335
Precautionary Statements:P261-P305+P351+P338

Application In Synthesis of Fmoc-β-Ala-OH

* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.

  • Downstream synthetic route of [ 35737-10-1 ]

[ 35737-10-1 ] Synthesis Path-Downstream   1~28

  • 1
  • [ 771-61-9 ]
  • [ 35737-10-1 ]
  • [ 149303-38-8 ]
  • 2
  • [ 29022-11-5 ]
  • [ 117-78-2 ]
  • [ 35737-10-1 ]
  • ArgPmc-Ual-Sar-Chi-Chi-Tal-ArgPmc-Rink amide MBHA resin [ No CAS ]
  • anthraquinone-2-carbonyl-β-Ala-Gly-Arg-β-(uracyl-1-yl)-D-alanyl-Sar-[β-(1,2,3,4-tetrahydro-2,4-dioxoquinazolin-3-yl)-D-alanyl]2-β-(thymin-1-yl)-D-alanyl-Arg-NH2 [ No CAS ]
  • 3
  • [ 117-78-2 ]
  • [ 35737-10-1 ]
  • ArgPmc-Ual-Sar-Chi-Chi-Tal-ArgPmc-Rink amide MBHA resin [ No CAS ]
  • anthraquinone-2-carbonyl-β-Ala-Arg-β-(uracyl-1-yl)-D-alanyl-Sar-[β-(1,2,3,4-tetrahydro-2,4-dioxoquinazolin-3-yl)-D-alanyl]2-β-(thymin-1-yl)-D-alanyl-Arg-NH2 [ No CAS ]
  • 4
  • [ 7304-32-7 ]
  • [ 35737-10-1 ]
  • [ 129397-83-7 ]
  • [ 389-08-2 ]
  • Fmoc-D-α-amino-4-(protected)-aminobutyric acid [ No CAS ]
  • 1-Ethyl-7-methyl-4-oxo-1,4-dihydro-[1,8]naphthyridine-3-carboxylic acid [(7S,10R)-10-(2-amino-ethyl)-7-benzyl-9,12,16-trioxo-7,8,9,10,11,12,13,14,15,16-decahydro-6H-5-oxa-8,11,15-triaza-benzocyclotetradecen-2-yl]-amide [ No CAS ]
  • 5
  • [ 7304-32-7 ]
  • [ 35737-10-1 ]
  • [ 129397-83-7 ]
  • [ 389-08-2 ]
  • Fmoc-L-α-amino-4-(protected)-aminobutyric acid [ No CAS ]
  • 1-Ethyl-7-methyl-4-oxo-1,4-dihydro-[1,8]naphthyridine-3-carboxylic acid [(7S,10S)-10-(2-amino-ethyl)-7-benzyl-9,12,16-trioxo-7,8,9,10,11,12,13,14,15,16-decahydro-6H-5-oxa-8,11,15-triaza-benzocyclotetradecen-2-yl]-amide [ No CAS ]
  • 6
  • [ 5466-06-8 ]
  • [ 35737-10-1 ]
  • [ 76-05-1 ]
  • [ 193954-26-6 ]
  • [ 193954-28-8 ]
  • Fmoc-protected-β3-HTyr [ No CAS ]
  • H2N-β3-HAla-β3-HPh-β3-HTyr-HGly-S-ethylpropanoate trifluoroacetate [ No CAS ]
  • 7
  • [ 35737-10-1 ]
  • [ 1791-13-5 ]
  • [ 309920-76-1 ]
  • 8
  • [ 35737-10-1 ]
  • [ 3034-48-8 ]
  • [ 50383-85-2 ]
  • 9
  • [ 35737-10-1 ]
  • [ 29390-67-8 ]
  • C60H86N2O37 [ No CAS ]
  • 10
  • [ 7697-26-9 ]
  • [ 35737-10-1 ]
  • [ 76608-15-6 ]
  • [ 160751-44-0 ]
  • (S)-6-[(Diphenyl-p-tolyl-methyl)-amino]-2-(9H-fluoren-9-ylmethoxycarbonylamino)-hexanoic acid [ No CAS ]
  • [ 198544-42-2 ]
  • [ 147290-11-7 ]
  • [ 618-51-9 ]
  • C63H63BrF2I2N9O16P [ No CAS ]
YieldReaction ConditionsOperation in experiment
4% General procedure: General Procedure A for Rink Amide Resin Activation. Rink amide resin (Advanced ChemTech) was mixed with DCM (1 mL per 100 mg resin) and then shaken for 30 minutes. After activation, resin was washed three times with DMF (1 mL per 100 mg resin). [0079] General Procedure B for the Removal of the Fmoc Group from the Rink Amide Resin. Rink amide resin was mixed with 20% piperidine in DMF (1 mL per 100 mg resin) and shaken for 30 minutes, and then washed with DMF (1 mL per 100 mg resin, 3 times), isopropanol (1 mL per 100 mg resin, 3 times), and DCM (1 mL per 100 mg resin, 3 times) sequentially. The removal of the Fmoc group was confirmed by the ninhydrin test. [0080] General Procedure C for the Removal the Alloc Group from the Rink Amide Resin. The resin (200 mg) was washed with DCM (2 mL, 5 times) and shaken under 2 overnight with a solution of tetrakis(triphenylphosphine)palladium(0) (10 mg), AcOH (0.5 mL), and NMM (0.2 mL) in DCM (10 mL). The resin was then washed with DMF (2 mL, 3 times), isopropanol (2 mL, 3 times), and DCM (2 mL, 3 times). The removal of the Alloc group was confirmed by the ninhydrin test. [0081 ] General Procedure D for the Removal the Mtt Group from the Rink Amide Resin. The resin was washed with DCM (1 mL per 100 mg resin, 10 times). The resin was shaken with TFA (1% in DCM, 1 mL per 100 mg resin) for 1 minute (repeat 10 times). The resin was then washed with DCM (1 mL per 100 mg resin, 3 times), DMF (1 mL per 100 mg resin, 3 times), isopropanol (1 mL per 100 mg resin, 3 times), and DCM (1 mL per 100 mg resin, 3 times). The removal of the Mtt group was confirmed by the ninhydrin test. [0082] General Procedure E for the Coupling of Carboxylic Acids to the Rink Amide Resin. Carboxylic acids (5 equiv, 0.5 M in DMF) were first mixed with HBTU (5 equiv, 0.5 M in DMF), HOBt (5 equiv, 0.5 M in DMF), and NMM (15 equiv, 1.5 M inDMF). The mixed solution was then added to the resin and shaken for 2 hours. The resin was then washed with DMF (1 mL per 100 mg resin, 3 times), isopropanol (1 mL per 100 mg resin, 3 times), and DCM (1 mL per 100 mg resin, 3 times). The completion of the coupling reaction was confirmed by the ninhydrin test. [0083] General Procedure F for Peptide Cleavage from the Rink Amide Resin. The resin was washed with DCM (1 mL per 100 mg resin, 5 times) and subsequently shaken with a solution of 95% TFA, 2.5% TIS, and 2.5% H20 (1 mL per 100 mg resin) for 2 hours. The resin was removed by filtration, and the TFA was evaporated under vacuum. The crude peptide was obtained after trituration with diethyl ether (5 mL per 100 mg resin, 2 times). Compound 6a was synthesized using standard Fmoc chemistry on the Rink amide resin in a disposable syringe with a frit (Figure 16). Rink amide resin (200 mg, 0.7 mmol/g loading, 0.14 mmol) was first activated with DCM (2 mL, general procedure A). Fmoc group was removed by piperidine (20% solution in DMF, 2mL, general procedure B). The resin was the coupled with Fmoc-Lys(Mtt)-OH (general procedure E). After the deprotection of Fmoc group (general procedure B), the resin was couple with Fmoc^-Ala-OH (general procedure E). The resin was treated with piperidine (general procedure B) and coupled with Fmoc-Dpr(Boc)-OH (general procedure E). The resin was treated with piperidine (general procedure B) and coupled with Fmoc- Orn(Alloc)-OH (general procedure E). The Fmoc group was removed (general procedure B), and the resin was coupled with Fmoc-F2Pmp-OH (general procedure E). The resin was treated with piperidine (general procedure B) and coupled with BMBA (general procedure E). The Alloc group was removed (general procedure C), and resin was coupled with mlBA (general procedure E). The resin was treated with 1% TFA in DCM for the removal of Mtt group (general procedure D) and coupled with 5-FAM (general procedure E). Compound 6a was cleaved from beads (general procedure F). Crude peptide was purified by HPLC to afford Compound 6a (8.6 mg, 4% yield). MS (ESI): calculated for [M] 1477, found [M+H]+ 1478. Figure 16 depicts the synthesis of Compound 6a: (a) 30% piperidine/DMF; (b) Fmoc-Lys(Mtt)-OH/HBTU/HOBt/NMM; (c) Fmoc-p-Ala- OH/HBTU/HOBt/NMM; (d) Fmoc-Dpr(Boc)-OH/HBTU/HOBt/NMM; (e) Fmoc- Orn(Alloc)-OH/HBTU/HOBt/NMM; (f) Fmoc-F2Pmp-OH/HBTU/HOBt/NMM; (g) 3- bromo-4-methylbenzoic acid/HBTU/HOBt/NMM; (h) Pd(0)/NMM/AcOH; (i) 3- iodobenzoic acid/HBTU/HOBt/NMM; (j)l% TFA/TIS/DCM; (k) 5-Carboxyfluorescein/ HBTU/HOBt/NMM; (1) 95% TFA/H2O/TIS.
  • 11
  • [ 35737-10-1 ]
  • [ 76608-15-6 ]
  • [ 160751-44-0 ]
  • (S)-6-[(Diphenyl-p-tolyl-methyl)-amino]-2-(9H-fluoren-9-ylmethoxycarbonylamino)-hexanoic acid [ No CAS ]
  • [ 147290-11-7 ]
  • [ 618-51-9 ]
  • C52H53F2IN7O14P [ No CAS ]
YieldReaction ConditionsOperation in experiment
6% General procedure: .General Procedure A for Rink Amide Resin Activation. Rink amide resin (Advanced ChemTech) was mixed with DCM (1 mL per 100 mg resin) and then shaken for 30 minutes. After activation, resin was washed three times with DMF (1 mL per 100 mg resin). [0079] General Procedure B for the Removal of the Fmoc Group from the Rink Amide Resin. Rink amide resin was mixed with 20% piperidine in DMF (1 mL per 100 mg resin) and shaken for 30 minutes, and then washed with DMF (1 mL per 100 mg resin, 3 times), isopropanol (1 mL per 100 mg resin, 3 times), and DCM (1 mL per 100 mg resin, 3 times) sequentially. The removal of the Fmoc group was confirmed by the ninhydrin test. [0080] General Procedure C for the Removal the Alloc Group from the Rink Amide Resin. The resin (200 mg) was washed with DCM (2 mL, 5 times) and shaken under 2 overnight with a solution of tetrakis(triphenylphosphine)palladium(0) (10 mg), AcOH (0.5 mL), and NMM (0.2 mL) in DCM (10 mL). The resin was then washed with DMF (2 mL, 3 times), isopropanol (2 mL, 3 times), and DCM (2 mL, 3 times). The removal of the Alloc group was confirmed by the ninhydrin test. [0081 ] General Procedure D for the Removal the Mtt Group from the Rink Amide Resin. The resin was washed with DCM (1 mL per 100 mg resin, 10 times). The resin was shaken with TFA (1% in DCM, 1 mL per 100 mg resin) for 1 minute (repeat 10 times). The resin was then washed with DCM (1 mL per 100 mg resin, 3 times), DMF (1 mL per 100 mg resin, 3 times), isopropanol (1 mL per 100 mg resin, 3 times), and DCM (1 mL per 100 mg resin, 3 times). The removal of the Mtt group was confirmed by the ninhydrin test. [0082] General Procedure E for the Coupling of Carboxylic Acids to the Rink Amide Resin. Carboxylic acids (5 equiv, 0.5 M in DMF) were first mixed with HBTU (5 equiv, 0.5 M in DMF), HOBt (5 equiv, 0.5 M in DMF), and NMM (15 equiv, 1.5 M inDMF). The mixed solution was then added to the resin and shaken for 2 hours. The resin was then washed with DMF (1 mL per 100 mg resin, 3 times), isopropanol (1 mL per 100 mg resin, 3 times), and DCM (1 mL per 100 mg resin, 3 times). The completion of the coupling reaction was confirmed by the ninhydrin test. [0083] General Procedure F for Peptide Cleavage from the Rink Amide Resin. The resin was washed with DCM (1 mL per 100 mg resin, 5 times) and subsequently shaken with a solution of 95% TFA, 2.5% TIS, and 2.5% H20 (1 mL per 100 mg resin) for 2 hours. The resin was removed by filtration, and the TFA was evaporated under vacuum. The crude peptide was obtained after trituration with diethyl ether (5 mL per 100 mg resin, 2 times). Compound 4a was synthesized using standard Fmoc chemistry on the Rink amide resin in a disposable syringe with a frit (Figure 14). Rink amide resin (200 mg, 0.7 mmol/g loading, 0.14 mmol) was first activated with DCM (2 mL, general procedure A). Fmoc group was removed by piperidine (20% solution in DMF, 2mL, general procedure B). The resin was the coupled with Fmoc-Lys(Mtt)-OH (general procedure E). After the deprotection of Fmoc group (general procedure B), the resin was couple with Fmoc^-Ala-OH (general procedure E). The resin was treated with piperidine (general procedure B) and coupled with <strong>[147290-11-7]<strong>[147290-11-7]Fmoc-Orn(Alloc)</strong>-OH</strong> (general procedure E). The Fmoc group was removed (general procedure B), and the resin was coupled with Fmoc- F2Pmp-OH (general procedure E). The Alloc group was removed (general procedure C), and resin was coupled with mlBA (general procedure E). The resin was treated with 1% TFA in DCM for the removal of Mtt group (general procedure D) and coupled with 5-FAM (general procedure E). The resin was treated with piperidine to remove Fmoc group. Compound 4a was cleaved from beads (general procedure F). Crude peptide was purified by HPLC to afford 4a (10.4 mg, 6%> yield). MS (ESI): calculated for [M] 1195, found [M+H]+ 1196 Figure 14 depicts the synthesis of Compound 4a: (a) 30% piperidine/DMF; (b) Fmoc-Lys(Mtt)-OH/HBTU/HOBt/NMM; (c) Fmoc-p-Ala-OH/HBTU/HOBt/NMM; (d) <strong>[147290-11-7]<strong>[147290-11-7]Fmoc-Orn(Alloc)</strong>-OH</strong>/HBTU/HOBt/NMM; (e) Fmoc-F2Pmp-OH/HBTU/HOBt/NMM; (f) Pd(0)/NMM/AcOH; (g) 3-iodobenzoic acid/HBTU/HOBt/NMM; (h) 1% TFA/TIS/DCM; (i) 5-Carboxyfluorescein/HBTU/HOBt/NMM; (j) 95% TFA/H20/TIS.
  • 12
  • trityl chloride polystyrene resin [ No CAS ]
  • [ 1240507-79-2 ]
  • [ 35737-10-1 ]
  • [ 71989-23-6 ]
  • [ 84000-07-7 ]
  • [ 138775-22-1 ]
  • C58H84N5O10PolSi [ No CAS ]
  • 13
  • trityl chloride polystyrene resin [ No CAS ]
  • [ 1240507-79-2 ]
  • [ 35737-10-1 ]
  • [ 35661-40-6 ]
  • [ 84000-07-7 ]
  • [ 138775-22-1 ]
  • C61H82N5O10PolSi [ No CAS ]
  • 14
  • trityl chloride polystyrene resin [ No CAS ]
  • [ 1240507-79-2 ]
  • [ 35737-10-1 ]
  • [ 71989-23-6 ]
  • [ 84000-07-7 ]
  • [ 77128-73-5 ]
  • C61H82N5O10PolSi [ No CAS ]
  • 15
  • trityl chloride polystyrene resin [ No CAS ]
  • [ 1240507-79-2 ]
  • [ 35737-10-1 ]
  • [ 35661-40-6 ]
  • [ 84000-07-7 ]
  • [ 77128-73-5 ]
  • C64H80N5O10PolSi [ No CAS ]
  • 16
  • trityl chloride polystyrene resin [ No CAS ]
  • [ 1240507-79-2 ]
  • [ 35737-10-1 ]
  • [ 71989-23-6 ]
  • [ 103478-58-6 ]
  • [ 138775-22-1 ]
  • C60H88N5O10PolSi [ No CAS ]
  • 17
  • trityl chloride polystyrene resin [ No CAS ]
  • [ 1240507-79-2 ]
  • [ 35737-10-1 ]
  • [ 35661-40-6 ]
  • [ 103478-58-6 ]
  • [ 138775-22-1 ]
  • C63H86N5O10PolSi [ No CAS ]
  • 18
  • trityl chloride polystyrene resin [ No CAS ]
  • [ 1240507-79-2 ]
  • [ 35737-10-1 ]
  • [ 71989-23-6 ]
  • [ 77128-73-5 ]
  • [ 103478-58-6 ]
  • C63H86N5O10PolSi [ No CAS ]
  • 19
  • trityl chloride polystyrene resin [ No CAS ]
  • [ 1240507-79-2 ]
  • [ 35737-10-1 ]
  • [ 35661-40-6 ]
  • [ 77128-73-5 ]
  • [ 103478-58-6 ]
  • C66H84N5O10PolSi [ No CAS ]
  • 20
  • trityl chloride polystyrene resin [ No CAS ]
  • [ 1240507-79-2 ]
  • [ 35737-10-1 ]
  • [ 103478-62-2 ]
  • [ 71989-23-6 ]
  • [ 138775-22-1 ]
  • C61H90N5O10PolSi [ No CAS ]
  • 21
  • trityl chloride polystyrene resin [ No CAS ]
  • [ 1240507-79-2 ]
  • [ 35737-10-1 ]
  • [ 35661-40-6 ]
  • [ 103478-62-2 ]
  • [ 138775-22-1 ]
  • C64H88N5O10PolSi [ No CAS ]
  • 22
  • trityl chloride polystyrene resin [ No CAS ]
  • [ 1240507-79-2 ]
  • [ 35737-10-1 ]
  • [ 103478-62-2 ]
  • [ 71989-23-6 ]
  • [ 77128-73-5 ]
  • C64H88N5O10PolSi [ No CAS ]
  • 23
  • trityl chloride polystyrene resin [ No CAS ]
  • [ 1240507-79-2 ]
  • [ 35737-10-1 ]
  • [ 35661-40-6 ]
  • [ 103478-62-2 ]
  • [ 77128-73-5 ]
  • C67H86N5O10PolSi [ No CAS ]
  • 24
  • [ 68858-20-8 ]
  • [ 35661-39-3 ]
  • [ 35737-10-1 ]
  • C22H21N2O5Pol [ No CAS ]
  • [ 71989-31-6 ]
  • [ 71989-35-0 ]
  • [ 35661-60-0 ]
  • [ 132327-80-1 ]
  • [ 138775-22-1 ]
  • N-FMOC-O-tert-butyl-D-threonine [ No CAS ]
  • C55H94N14O18 [ No CAS ]
YieldReaction ConditionsOperation in experiment
General procedure: Automated solid-phasepeptide synthesis was performed on a 0.1 mmol scale. 278 mg of Rink amide MBHA LL resin at a0.36 mmol/g substitution level was pre-swollen for 60 min in DMF and the solvent was drained.Fmoc-removal was achieved with a 20% piperidine solution in DMF, initial deprotection 30 s, 40 W,75 C, second step 180 s, 40 W, 70 C. After washing (3 × 7 mL DMF), 2.5 mL of a 0.2 M solution of theamino acid in DMF (5 eq relative to resin loading) was added. After addition of a 2 M solution ofDIPEA in DMF (0.5 mL, 10 eq) and a 0.45 M solution of HATU in DMF (1 mL, 4.5 eq), the reactionsolution was irradiated at 25 W for 5 min reaching a final temperature of 70 C. All amino acids werecoupled using these conditions except Fmoc-Gln(Trt)-OH for which a triple coupling was performedwith a prolonged reaction time of 20 min. After full elongation of the peptide, the linear protectedpeptide linked to the resin was transferred into a batch reactor and the allyl protecting group wascleaved using Pd(P(Ph3))4 (m = 0.35 g, 0.3 mmol, 3 eq) with a solution of CHCl3/AcOH, NMM:3.7/0.2/01 for 4 h at room temperature. After washing the resin using a solution of 0.5%diethyldithiocarbamate in DMF (3 × 10 mL) and DMF (3 × 10 mL) and lastly Fmoc removal, thecyclisation was performed with diisopropylcarbodiimide (DIC) and Oxyma, 1 mL, C = 0.5 M, 70 C 3× 20 min, then 120 s at 20 C between each cycle, followed by a final wash with DMF (3 × 7 mL). A Kaiser test was carried out in order to check reaction completion. Finally, the resin was washed withDCM (3 × 10 mL), transferred to a flask, and the cleavage cocktail (TFA, H2O, TIS 95/2.5/2.5) added.The resin was shaken for 3 h. The cleaving solution was collected and the resin washed with TFA (2 ×3 mL). The combined fractions were concentrated in vacuum. The crude peptide was precipitated incold Et2O and finally centrifuged. The precipitate was washed with cold ether, extracted with water,and freeze-dried to yield the crude peptide.
  • 25
  • [ 455-40-3 ]
  • [ 6214-20-6 ]
  • [ 35737-10-1 ]
  • [ 71989-31-6 ]
  • [ 108-24-7 ]
  • [ 138775-22-1 ]
  • [ 204316-32-5 ]
  • (2S)-1-[3-[acetyl(methyl)amino]propanoyl]-N-[(1S)-1-[[(1S)-3-[(3,5-difluorobenzoyl)amino]-1-(hydroxycarbamoyl)propyl]carbamoyl]-2-methylbutyl]-N-methylpyrrolidine-2-carboxamide [ No CAS ]
YieldReaction ConditionsOperation in experiment
1.5 eq of commercially available Fmoc-NH-OH and DIEA (10 eq) are added to the 2-chlorotrityl resin in 2 mL DCM. The mixture is intermittently stirred manually during 24h. After that, 0.5 mL/g of MeOH are added to the reaction mixture to cap the remaining reactive points of the resin. After 15 minutes, the solution is filtered off and the resin is washed thoroughly with DCM, DMF and MeOH. Fmoc removal is achieved by treating the resin with 20% piperidine in DMF (1 x 5', 1 x 10' and 1 x 15'). For the coupling of Na-Fmoc-NY-alloc-L-2,4-diaminobutyric acid (Fmoc-L-Dab(alloc)-OH), 3 eq of the amino acid, 3 eq of the coupling agent DIC and 3 eq of oxyma pure are dissolved in a small amount of DMF and premixed for 2 minutes. The resulting mixture is added to the resin and the reaction is allowed to proceed for 60 minutes. To extent of the reaction is monitored using the Kaiser test. The Fmoc group is then removed by treatments with 20% piperidine in DMF (1 x 5', 1 x 10' and 1 x 15 '). After that, Fmoc- N-methyl-L-iso leucine (Fmoc-NMe-L-Ile-OH) moiety is attached, for that purpose 3 eq of the amino acid, 3 eq of the coupling agent DIC and 3 eq of oxyma pure are dissolved in a small amount of DMF and premixed for 2 minutes. The resulting mixture is added to the resin and the reaction is allowed to proceed for 60 minutes. The extent of the reaction is monitored using the Kaiser test. The Fmoc group is then removed by treatments with 20% piperidine in DMF (1 x 5', 1 x 10' and 1 x 15 '). After that, Fmoc- L-Proline (Fmoc-L-Pro-OH) moiety is attached, for that purpose 3 eq of the amino acid, 3 eq of the coupling agent DIC and 3 eq of oxyma pure dissolved in a small amount of DMF and premixed for 2 minutes. The resulting the mixture is added to the resin and the reaction is allowed to proceed for 60 minutes. The extent of the reaction is monitored using the Kaiser test. The Fmoc group is then removed by treatments with 20% piperidine in DMF (1 x 5', 1 x 10' and 1 x 15') and additional treatment with a mixture of piperidine/DBU/toluene/DMF (5:5:20:70) (1 x 5'). After that, Fmoc-beta- alanine (Fmoc-P-Ala-OH) moiety is attached, for that purpose 3 eq of the amino acid, 3 eq of the coupling agent DIC and 3 eq of oxyma pure are dissolved in a small amount of DMF and premixed for 2 minutes. The resulting mixture is added to the resin and the reaction is allowed to proceed for 60 minutes. The extent of the reaction is monitored using the Kaiser test. The Fmoc group is then removed by treatments with 20% piperidine in DMF (1 x 5', 1 x 10' and 1 x 15'). The N-methylation of the amino group is achieved by treating the resin with 3 eq of 7-methyl-l,5,7-triazabicyclo[4.4.0]dec-5- ene and 4 eq of para-nitrobencensulfonate in DMF for 30 minutes (3 treatments). Between treatments the resin is washed thoroughly with DMF and DCM. After the N- methylation of the beta -Ala amino group, the ortho-nitro benzene sulfonyl protecting group is removed by treating the resin with 10 eq of beta-mercaptoethanol and 5 eq of DBU (1 x 10' and 1 x 40'). The removal of the ortho-nitro benzene sulfonyl group is assessed using the chloranil test. For the acetylation of the N-part terminal part of the peptide, 20 eq of acetic anhydride and 20 eq of DIE A are added to the resin. The mixture is allowed to react for 30 minutes and the extent of the reaction is monitored using the chloranil test. For the removal of the Alloc group, 10 eq of phenylsilane in DCM are added to the resin while N2 is bubbled through the mixture. Then, 0.1 eq of Pd(PPh3)4 are added maintaining the N2 bubbling while mixing everything well. Then the reaction vessel is sealed and shaken for 15 minutes. After this time, the reaction is filtered and the resin washed thoroughly. The same treatment is repeated two more times. After the last treatment, the resin is washed thoroughly with DCM, MeOH and DMF. For the coupling of the 3,5-difluorobenzoic acid on the side chain of the diaminoethyl moiety, 3 eq of said acid, 3 eq of the coupling agent DIC and 3 eq of oxyma pure are dissolved in a small amount of DMF and premixed for 2 minutes. The resulting mixture is added to the resin and the reaction is allowed to proceed for 60 minutes. After this time, the resin is washed with DMF and DCM and the extent of the reaction is monitored the Kaiser test. For the cleavage of the peptide, the resin is washed several times with DCM and dried by suction. The peptide is cleaved from the resin by adding a solution of DCM/TFA (95:5), the mixture is allowed to react for 15 min. Then the reaction mixture is filtered and the resin rinsed with DCM. This cleavage procedure is repeated twice. All the filtrates are pooled and the solvent is evaporated under vacuum, yielding example 13. The compound is purified using reverse-phase chromatography.
  • 26
  • [ 35737-10-1 ]
  • C23H45N6O5Pol [ No CAS ]
  • [ 75932-02-4 ]
  • [ 125238-99-5 ]
  • C59H111N16O15Pol [ No CAS ]
  • 27
  • C21H23O4N [ No CAS ]
  • [ 6089-09-4 ]
  • [ 35737-10-1 ]
  • [ 35661-40-6 ]
  • [ 71989-18-9 ]
  • [ 129460-09-9 ]
  • [ 71989-38-3 ]
  • [ 103213-32-7 ]
  • [ 35661-38-2 ]
  • [ 132388-59-1 ]
  • [ 96402-49-2 ]
  • [ 77128-70-2 ]
  • [ 162558-25-0 ]
  • C115H163N29O38S [ No CAS ]
YieldReaction ConditionsOperation in experiment
General procedure: Peptide synthesis was based on Fmoc chemistry, using a Symphony peptide synthesiser manufactured by Peptide Instruments and a Syro II synthesiser by MultiSynTech. Standard Fmoc- amino acids were employed (Sigma, Merck), with the following side chain protecting groups: Arg(Pbf); Asn(Trt); Asp(OtBu); Cys(Trt); GIu(OtBu); Gln(Trt); His(Trt); Lys(Boc); Ser(tBu); Thr(tBu); Trp(Boc); and Tyr(tBu) (Sigma). The coupling reagent was HCTU (Pepceuticals), diisopropylethylamine (DIPEA, Sigma) was employed as a base, and deprotection was achieved with 20percent piperidine in DMF (AGTC). Syntheses were performed using 0.37 mmol/gr Fmoc-Rink amide AM resin (AGTC), Fmoc-amino acids were utilised at a four-fold excess, and base was at a four-fold excess with respect to the amino acids. Amino acids were dissolved at 0.2M in DMSO, HCTU at 0.4M in DMF, and DIPEA at 1.6M in N-methylpyrrolidone (Alfa Aesar). Conditions were such that coupling reactions contained between 20 to 50percent DMSO in DMF, which reduced aggregation and deletions during the solid phase synthesis and enhanced yields. Coupling times were generally 30 minutes, and deprotection times 2 x 5 minutes. Fmoc-N-methylglycine (Fmoc- Sar-OH, Merck) was coupled for 1 hr, and deprotection and coupling times for the following residue were 20 min and 1 hr, respectively. After synthesis, the resin was washed with dichloromethane, and dried. Cleavage of side-chain protecting groups and from the support was effected using 10 mL of 95:2.5:2.5:2.5 v/v/v/w TFA/H20/iPr3SiH/dithiothreitol for 3 hours. Following cleavage, the spent resin was removed by filtration, and the filtrate was added to 35 mL of diethylether that had been cooled at -80°C. Peptide pellet was centrifuged, the etheric supernatant discarded, and the peptide pellet washed with cold ether two more times. Peptides were then resolubilised in 5-10 mL acetonitrile-water and lyophilised. A small sample was removed for analysis of purity of the crude product by mass spectrometry (MALDI-TOF, Voyager DE from Applied Biosystems). Following lyophilisation, peptide powders were taken up in 10 mL 6 M guanidinium hydrochloride in H20, supplemented with 0.5 mL of 1 M dithiothreitol, and loaded onto a C8 Luna preparative HPLC column (Phenomenex). Solvents (H20, acetonitrile) were acidified with 0.1 percent heptafluorobutyric acid. The gradient ranged from 30-70 percent acetonitrile in 15 minutes, at a flowrate of 15-20 mL /min, using a Gilson preparative HPLC system. Fractions containing pure linear peptide material (as identified by MALDI) were used for preparation of the bicycle derivatives by coupling to a scaffold molecule as described further below.A bicycle peptide designated 17-69-07-N434 was made corresponding to the bicycle peptide of Example lwith an N-terminal SarlO spacer similar to that of Reference Example 1, and conjugating group PYA (4-pentynoic acid, for "click" derivatisation with toxin). The structure of this derivative is shown schematically in Fig. 5. The linear peptide used to form this bicycle was as follows:(PYA)-(B-Ala)-SarlO-A(Dap)(D-Ala)NE(lNal)(D-Ala)CEDFYD(tBuGly)(Dap)The linear peptide and the bicycle peptide had the following LCMS Characteristics:
  • 28
  • C21H23O4N [ No CAS ]
  • [ 35661-39-3 ]
  • [ 35737-10-1 ]
  • [ 35661-40-6 ]
  • [ 71989-18-9 ]
  • [ 129460-09-9 ]
  • [ 71989-38-3 ]
  • [ 103213-32-7 ]
  • [ 35661-38-2 ]
  • [ 132388-59-1 ]
  • [ 96402-49-2 ]
  • C79H106N18O27S [ No CAS ]
YieldReaction ConditionsOperation in experiment
General procedure: Peptide synthesis was based on Fmoc chemistry, using a Symphony peptide synthesiser manufactured by Peptide Instruments and a Syro II synthesiser by MultiSynTech. Standard Fmoc- amino acids were employed (Sigma, Merck), with the following side chain protecting groups: Arg(Pbf); Asn(Trt); Asp(OtBu); Cys(Trt); GIu(OtBu); Gln(Trt); His(Trt); Lys(Boc); Ser(tBu); Thr(tBu); Trp(Boc); and Tyr(tBu) (Sigma). The coupling reagent was HCTU (Pepceuticals), diisopropylethylamine (DIPEA, Sigma) was employed as a base, and deprotection was achieved with 20percent piperidine in DMF (AGTC). Syntheses were performed using 0.37 mmol/gr Fmoc-Rink amide AM resin (AGTC), Fmoc-amino acids were utilised at a four-fold excess, and base was at a four-fold excess with respect to the amino acids. Amino acids were dissolved at 0.2M in DMSO, HCTU at 0.4M in DMF, and DIPEA at 1.6M in N-methylpyrrolidone (Alfa Aesar). Conditions were such that coupling reactions contained between 20 to 50percent DMSO in DMF, which reduced aggregation and deletions during the solid phase synthesis and enhanced yields. Coupling times were generally 30 minutes, and deprotection times 2 x 5 minutes. Fmoc-N-methylglycine (Fmoc- Sar-OH, Merck) was coupled for 1 hr, and deprotection and coupling times for the following residue were 20 min and 1 hr, respectively. After synthesis, the resin was washed with dichloromethane, and dried. Cleavage of side-chain protecting groups and from the support was effected using 10 mL of 95:2.5:2.5:2.5 v/v/v/w TFA/H20/iPr3SiH/dithiothreitol for 3 hours. Following cleavage, the spent resin was removed by filtration, and the filtrate was added to 35 mL of diethylether that had been cooled at -80°C. Peptide pellet was centrifuged, the etheric supernatant discarded, and the peptide pellet washed with cold ether two more times. Peptides were then resolubilised in 5-10 mL acetonitrile-water and lyophilised. A small sample was removed for analysis of purity of the crude product by mass spectrometry (MALDI-TOF, Voyager DE from Applied Biosystems). Following lyophilisation, peptide powders were taken up in 10 mL 6 M guanidinium hydrochloride in H20, supplemented with 0.5 mL of 1 M dithiothreitol, and loaded onto a C8 Luna preparative HPLC column (Phenomenex). Solvents (H20, acetonitrile) were acidified with 0.1 percent heptafluorobutyric acid. The gradient ranged from 30-70 percent acetonitrile in 15 minutes, at a flowrate of 15-20 mL /min, using a Gilson preparative HPLC system. Fractions containing pure linear peptide material (as identified by MALDI) were used for preparation of the bicycle derivatives by coupling to a scaffold molecule as described further below.The Bicyclic Peptide chosen for comparison of thioether to alkylamino scaffold linkage was designated 17-69-07-N241. It is a bicycle conjugate of a thioether- forming peptide with a trimethylene benzene scaffold. The structure of this bicycle derivative is shown schematically in Fig. 2. The linear peptide before conjugation has sequence:H-( -Ala)-SarlO-Ala-Cys-(D-Ala)-Asn-Glu-(lNal)-(D-Ala)-Cys-Glu-Asp-Phe-Tyr-Asp-(tBuGly)- Cys-NH2
 

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