Structure of 2915-53-9
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Han, Xuexiang ; Xu, Ying ; Ricciardi, Adele ; Xu, Junchao ; Palanki, Rohan ; Chowdhary, Vivek , et al.
Abstract: mRNA-based gene editing therapeutics offer the potential to permanently cure diseases but are hindered by suboptimal delivery platforms. Here, we devise a robust combinatorial chemistry for plug-and-play assembly of diverse biodegradable ionizable lipids and identify a lead candidate that produces superior lipid nanoparticles for various gene editing tools delivery in vivo. Our study highlights the utility of this synthetic approach and the generality of this platform for potent in vivo gene editing.
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CAS No. : | 2915-53-9 |
Formula : | C20H36O4 |
M.W : | 340.50 |
SMILES Code : | O=C(OCCCCCCCC)/C=C\C(OCCCCCCCC)=O |
MDL No. : | MFCD00072705 |
InChI Key : | TVWTZAGVNBPXHU-NXVVXOECSA-N |
Pubchem ID : | 6433353 |
GHS Pictogram: |
![]() |
Signal Word: | Warning |
Hazard Statements: | H302-H315-H319-H335 |
Precautionary Statements: | P261-P305+P351+P338 |
Num. heavy atoms | 24 |
Num. arom. heavy atoms | 0 |
Fraction Csp3 | 0.8 |
Num. rotatable bonds | 18 |
Num. H-bond acceptors | 4.0 |
Num. H-bond donors | 0.0 |
Molar Refractivity | 100.35 |
TPSA ? Topological Polar Surface Area: Calculated from |
52.6 ?2 |
Log Po/w (iLOGP)? iLOGP: in-house physics-based method implemented from |
4.83 |
Log Po/w (XLOGP3)? XLOGP3: Atomistic and knowledge-based method calculated by |
7.04 |
Log Po/w (WLOGP)? WLOGP: Atomistic method implemented from |
5.35 |
Log Po/w (MLOGP)? MLOGP: Topological method implemented from |
4.01 |
Log Po/w (SILICOS-IT)? SILICOS-IT: Hybrid fragmental/topological method calculated by |
6.15 |
Consensus Log Po/w? Consensus Log Po/w: Average of all five predictions |
5.48 |
Log S (ESOL):? ESOL: Topological method implemented from |
-5.2 |
Solubility | 0.00216 mg/ml ; 0.00000633 mol/l |
Class? Solubility class: Log S scale |
Moderately soluble |
Log S (Ali)? Ali: Topological method implemented from |
-7.96 |
Solubility | 0.00000372 mg/ml ; 0.0000000109 mol/l |
Class? Solubility class: Log S scale |
Poorly soluble |
Log S (SILICOS-IT)? SILICOS-IT: Fragmental method calculated by |
-5.76 |
Solubility | 0.000596 mg/ml ; 0.00000175 mol/l |
Class? Solubility class: Log S scale |
Moderately soluble |
GI absorption? Gatrointestinal absorption: according to the white of the BOILED-Egg |
High |
BBB permeant? BBB permeation: according to the yolk of the BOILED-Egg |
Yes |
P-gp substrate? P-glycoprotein substrate: SVM model built on 1033 molecules (training set) |
No |
CYP1A2 inhibitor? Cytochrome P450 1A2 inhibitor: SVM model built on 9145 molecules (training set) |
No |
CYP2C19 inhibitor? Cytochrome P450 2C19 inhibitor: SVM model built on 9272 molecules (training set) |
No |
CYP2C9 inhibitor? Cytochrome P450 2C9 inhibitor: SVM model built on 5940 molecules (training set) |
No |
CYP2D6 inhibitor? Cytochrome P450 2D6 inhibitor: SVM model built on 3664 molecules (training set) |
No |
CYP3A4 inhibitor? Cytochrome P450 3A4 inhibitor: SVM model built on 7518 molecules (training set) |
No |
Log Kp (skin permeation)? Skin permeation: QSPR model implemented from |
-3.38 cm/s |
Lipinski? Lipinski (Pfizer) filter: implemented from |
0.0 |
Ghose? Ghose filter: implemented from |
None |
Veber? Veber (GSK) filter: implemented from |
1.0 |
Egan? Egan (Pharmacia) filter: implemented from |
0.0 |
Muegge? Muegge (Bayer) filter: implemented from |
2.0 |
Bioavailability Score? Abbott Bioavailability Score: Probability of F > 10% in rat |
0.55 |
PAINS? Pan Assay Interference Structures: implemented from |
0.0 alert |
Brenk? Structural Alert: implemented from |
2.0 alert: heavy_metal |
Leadlikeness? Leadlikeness: implemented from |
No; 1 violation:MW<2.0 |
Synthetic accessibility? Synthetic accessibility score: from 1 (very easy) to 10 (very difficult) |
3.57 |
* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With potassium hydroxide; In chloroform; 1-bromo-hexane; water; Petroleum ether; | (ii) Preparation of Hexyl/Octyl Maleate/Fumarate Monooctyl maleic/fumaric acid (88 g, 0.39 mole) was dissolved in chloroform (200 ml) and was stirred in a 1 L Erlenmeyer (Quick Fit) flask, fitted with condenser, with a solution of potassium hydroxide (21 g, 0.38 mole) and tetrabutyl ammonium iodide (15 g, 0.04 mole) in 200 mls of water. To the stirred mixture was added hexyl bromide 64 g, 0.39 mole) and the two phase mixture was stirred rapidly under reflux for 5 hours. The chloroform layer was separated off, washed with sodium carbonate solution, then with water, and then dried over sodium sulphate. After filtering and evaporating the resulting oil was treated with 30/40 petroleum ether which precipitated the catalyst which could be reused. Filtration/evaporation yielded the crude product as an oil (77 g). Distillation in vacuo removed 13.1 g hexyl bromide. The yield of undistilled material was 59.3 g (62percent based on hexyl bromide). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
In water; | (iii) Preparation of Hexyl/Octyl Sulphosuccinate Hexyl/octyl maleate/fumarate (50 g, 0.16 mole) was dissolved in methylated spirit (100 ml) and the pH of the mixture was adjusted to about 7.5 with sodium carbonate. The mixture was stirred under reflux for 5 hours with a solution of sodium metabisulphite (60 g) in water (160 ml) in a 3-necked round bottom flask fitted with stirrer and condenser. The hot solution was filtered and set to crystallise. The crude crystals were filtered off, dried and extracted with boiling ethanol. The residual inorganics were filtered off. Evaporation of the filtrate yielded the product as a glassy solid (20 g) which failed to recrystallise from acetone or ethanol. This material contained 92percent detergent-active material and 1.5percent non-detergent organic matter. It had infra-red peaks at 1735 cm-1 (C=O) and 1210-1240 cm-1 (SO3 Na) and was also identified by 1 H NMR. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With potassium tert-butylate; In toluene; at 0 - 20℃; for 1.0h; | Example 21; Preparation of compound 190; To a suspension of 20 mg (0.17 mmol) of potassium tert-butanolate in 40 ml of dry toluene is added dropwise under nitrogen at 0°C 4.13 g (17.3 mmol) of 3-mercapto-propyltriethoxysi- lane, followed by the dropwise addition of 5.89 g (17.3 mmol) of <strong>[2915-53-9]dioctyl maleate</strong>. The reaction mixture is stirred for one hour at room temperature. Water is then added and the product is extracted with ethyl acetate. The organic phase is washed with H2O, NaCI, dried over sodium sulfate, filtered and evaporated to dryness using a rotary evaporator to afford 9.80 g of compound 190 as colourless liquid. 1H-NMR (300 MHz, CDCI3): delta = 4.20-4.00 (m, CO2CH2, 4H); 3.90-3.75 (m, SiOCH2, 6H); 3.70-3.60 (m, SCHCO2, 1 H); 3.10-2.95 (m, SCHCH2CO2, 1 H); 2.70-2.60 (m, SCHCH2CO2 + SCH2, 3H); 1.80-1.55 (m, SCH2CH2 + CO2CH2CH2, 6H); 1.55-1.15 (m, SiOCH2CH3 + CH2, 29H); 1.00-0.80 (m, CH3, 6H); 0.80-0.65 (m, SiCH2, 2H). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
70% | With C12H23O2(1-)*Cu(1+)*H2O; diethylzinc; 1,2-bis-(diphenylphosphino)ethane; In 5,5-dimethyl-1,3-cyclohexadiene; at 30℃; for 0.25h;Inert atmosphere; | Under a nitrogen atmosphere, Cu (O2C (CH2) 10CH3) 2 H2O (1.3 mg), an organic phosphineLigand Ph2P (CH2) 2PPh2 (2.3 mg), xylene (4.0 mL), <strong>[2915-53-9]dioctyl maleate</strong> (201 mg) and cyclohexanoneMaintaining the temperature to 30 ° C, diethylzinc in hexane (17percent w / w, 1.7 mL) was added and stirred for 15 min. Saturated aqueous ammonium chloride solution (2.0 mL) and dilute hydrochloric acid (2 mol / L, 1.0 mL) were added. The phases were separated and the aqueous filtrate was extracted with ethyl acetate (3 × 5.0 mL). The combined organic phases were washed with saturated brine (3.0 mL), dried over anhydrous sodium sulfate and concentrated. The residue was purified by column chromatographyOxo-1-oxaspiro [4.5] decane 4-carboxylic acid octyl ester of beta-methoxycarbonyl-gamma-butyrolactone structureIsomer mixture (127 mg, 70percent yield). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With potassium carbonate; In toluene; for 30.0h;Reflux; | General procedure: A mixture of trifluoromethylated N-acylhydrazone 1 or 6 (0.20 mmol), dimethyl maleate (2; 58 mg, 0.40 mmol) and K2CO3 (1. 4 mg, 0.01 mmol) in toluene (5 mL) was stirred at reflux for 30?40 h and monitored by TLC until the starting material could not be detected. Toluene was removed under vacuum and sat. aq NH4Cl (10 mL) was added to the reaction mixture and stirred for 10 min, and then the mixture was extracted with EtOAc (3 × 10 mL). The combined organic extracts were dried (MgSO4) and concentrated. Purification of the residue by silica gel column chromatography using PE/EtOAc (2:1) as eluent furnished the product 3 or 7, respectively. The isomers could not be fully separated by silica gel chromatography. One of the isomers could be isolated by recrystallization, except for 3pa and 3pa?, 3xa and 3xa?, 3ya and 3ya?, 7e and 7e?. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With potassium carbonate; In toluene; for 30.0h;Reflux; | General procedure: A mixture of trifluoromethylated N-acylhydrazone 1 or 6 (0.20 mmol), dimethyl maleate (2; 58 mg, 0.40 mmol) and K2CO3 (1. 4 mg, 0.01 mmol) in toluene (5 mL) was stirred at reflux for 30?40 h and monitored by TLC until the starting material could not be detected. Toluene was removed under vacuum and sat. aq NH4Cl (10 mL) was added to the reaction mixture and stirred for 10 min, and then the mixture was extracted with EtOAc (3 × 10 mL). The combined organic extracts were dried (MgSO4) and concentrated. Purification of the residue by silica gel column chromatography using PE/EtOAc (2:1) as eluent furnished the product 3 or 7, respectively. The isomers could not be fully separated by silica gel chromatography. One of the isomers could be isolated by recrystallization, except for 3pa and 3pa?, 3xa and 3xa?, 3ya and 3ya?, 7e and 7e?. |
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