Computational Chemistry of [ 24242-20-4 ] Show Less
Physicochemical Properties
Num. heavy atoms
10
Num. arom. heavy atoms
6
Fraction Csp3
0.0
Num. rotatable bonds
1
Num. H-bond acceptors
3.0
Num. H-bond donors
2.0
Molar Refractivity
35.6
TPSA ?
Topological Polar Surface Area: Calculated from Ertl P. et al. 2000 J. Med. Chem.
76.21 ?2
Lipophilicity
Log Po/w (iLOGP)?
iLOGP: in-house physics-based method implemented from Daina A et al. 2014 J. Chem. Inf. Model.
0.32
Log Po/w (XLOGP3)?
XLOGP3: Atomistic and knowledge-based method calculated by XLOGP program, version 3.2.2, courtesy of CCBG, Shanghai Institute of Organic Chemistry
0.03
Log Po/w (WLOGP)?
WLOGP: Atomistic method implemented from Wildman SA and Crippen GM. 1999 J. Chem. Inf. Model.
0.37
Log Po/w (MLOGP)?
MLOGP: Topological method implemented from Moriguchi I. et al. 1992 Chem. Pharm. Bull. Moriguchi I. et al. 1994 Chem. Pharm. Bull. Lipinski PA. et al. 2001 Adv. Drug. Deliv. Rev.
-1.72
Log Po/w (SILICOS-IT)?
SILICOS-IT: Hybrid fragmental/topological method calculated by FILTER-IT program, version 1.0.2, courtesy of SILICOS-IT, http://www.silicos-it.com
0.03
Consensus Log Po/w?
Consensus Log Po/w: Average of all five predictions
-0.19
Water Solubility
Log S (ESOL):?
ESOL: Topological method implemented from Delaney JS. 2004 J. Chem. Inf. Model.
Synthetic accessibility score: from 1 (very easy) to 10 (very difficult) based on 1024 fragmental contributions (FP2) modulated by size and complexity penaties, trained on 12'782'590 molecules and tested on 40 external molecules (r2 = 0.94)
1.42
Application In Synthesis of [ 24242-20-4 ]
* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.
With N-ethyl-N,N-diisopropylamine; HATU; In tetrahydrofuran; at 20℃; for 48h;
The 5-aimno-pypidme-2-carboxylic acid is coupled to N,N-diethyl-ethane-l,2-diamine(0 47mL, 3 32mmol), m the presence of O-(7-azabenzotriazol-l-yl)-lambdar,lambdar,iV',lambdar -tetramethyluronium hexafluorophosphate (1 26g, 3 33mmol), and DIPEA (0 59mL, 3 33mmol) m THF (10 mL) The mixture is stirred at room temperature for 48 hours The solvent is removed in vacuo and the residue partitioned between water-EtOAc The organic layer is dpied over MgSpsi4, filtered and concentrated to give a residue purified by silica gel column chromatography 5-Ammo-pypidme-2-carboxylic acid (2- diethylammo-ethyl)-amide is isolated (394mg, 100percent) elutmg with 96 4 DCM NH3 (7M in MeOH)
methanol-3 N sodium hydroxide-35% aqueous hydrogen peroxide[ No CAS ]
[ 55338-73-3 ]
[ 24242-20-4 ]
Yield
Reaction Conditions
Operation in experiment
56%
In water;
(a) 3-Amino-6-pyridinecarboxyamide 3-Amino-6-pyridinecarbonitrile (0.45 g) was mixed with 5 ml of methanol-3 N sodium hydroxide-35percent aqueous hydrogen peroxide (2:3:1 (v/v)). After stirring at room temperature for 30 minutes, 5 ml of water was added to precipitate a solid. The precipitated solid was collected by filtration, and washed with water and acetone, followed by drying. Thus, 0.29 g of a white powder was obtained (yield: 56percent).
Thionyl chloride (12.9 g, 109 mmol) was added to methanol (60 mL) at 0 C. The reaction mixture was stirred at 0 C for 1 h before 5-aminopicolinic acid (3.0 g, 21 .7 mmol) was added. The reaction solution was refluxed for 4 h. The reaction solution was cooled to room temperature and concentrated. The crude residue was dissolved in water (100 mL) and treated with saturated aqueous of sodium bicarbonate (30 mL). The aqueous layer was extracted with ethyl acetate (1 00 mL c 3). The combined organic layers were washed with brine (1 00 mL), dried over anhydrous sodium sulfate, filtered and concentrated to give methyl 5-aminopicolinate (2.6 g, 1 7.1 mmol, 78%) as a yellow oil. LCMS (ESI) m/z: 153.0 [M+H]+. Used in the next step directly without additional purification.
73%
With thionyl chloride; at 0℃; for 96h;Reflux;
Step 1. Methyl 5-aminopicolinate. To a stirred solution of 5-aminopicolinic acid (170 g, 1.23 mol) in MeOH (1700 ml) was added SOCl2 (178.6 ml, 2.47 mol) at 0 C. The reaction mixture was then refluxed for 72 h. The mixture was then cooled to 0 C. and additional SOCl2 was added (40 ml, 0.55 mol). The mixture was then refluxed for 24 h. The excess SOCl2 was removed under reduced pressure and the crude material was neutralized with aq. NaHCO3. The mixture was filtered and the filter cake dried at 40-50 C. overnight. The solid was collected to give methyl 5-aminopicolinate (350 g). The filtrate was further extracted with DCM (3×2 L). The organic extract was washed with brine, dried (Na2SO4) and concentrated to dryness to afford crude compound (200 g). All of solids were collected to give methyl 5-aminopicolinate (550 g from 680 g of compound 1, 73%) as a white solid. 1H NMR (400 MHz, CDCl3) delta 8.12 (d, J=2.5 Hz, 1H), 7.93 (d, J=8.5 Hz, 1H), 6.97 (dd, J=2.8, 8.5 Hz, 1H), 4.24 (br s, 2H), 3.93 (s, 3H).
63%
With thionyl chloride; at 80℃; for 12h;Inert atmosphere;
General procedure: A mixture of 4-aminobenzoic acid (32-34, 5.0 mmol), thionyl chloride(1.487 g, 5.0 mmol), and MeOH (20.0 mL) was flushed with argon, and stirred at80C for 12 hours. Remove reaction solvent by rota vapor. The reaction mixture wasneutralized with NaHCO3(sat) (20.0 mL) and extracted with ethyl acetate (100 mL ×3). The combined organic extracts were washed with brine, dried by Na2SO4, filtered,and evaporated, to get cmopound 35-37 (63-89%) as a white solid.
39%
With thionyl chloride; In methanol; at 0℃; for 24h;Reflux;
103451 5-Aminopyridine-2-carboxylic acid (2.00 g, 14.5 mmol) was dissolved in anhydrous methanol (20 mL) and cooled to 0 C. Thionyl chloride (3.15 mL, 43,4 mmol) was added drop-wise over 5 minutes and the mixture allowed to warm to room temperature then heated to reflux for 24 hours. The reaction mixture was concentrated, partitioned between ethyl acetate (30 mL) and saturated aqueous sodium bicarbonate solution (30 mL). The mixture was sonicated, the layers separated and the aqueous layer extracted with ethyl acetate (2 x 15 mL), The combined organic extracts were washed with brine (20 mL), dried over magnesium sulfate, filtered and concentrated to give the title compound 850 mg (39% yield) as an off- white powder. oH NMR (500 MHz, DMSO) 7.97 (d, J = 2.7 Hz, 1H), 7.74 (d, J = 8.6 Hz, 1H), 6.91 (dd, J = 8.6, 2.7 Hz, 1H), 6.18 (s, 2H), 3.76 (s, 3H).
With acetyl chloride;
Synthesis 255-(3,5-Dichloro-4-ethoxybenzamido)picolinic acid (AAA-026)5-(3,5-Dichloro-4-ethoxybenzamido)picolinic acid (AAA-026) (20 mg, quant, for final step) was prepared in essentially the same manner as in Steps (Hi) and (iv) for AAA-001 , except that 3,5-dichloro-4-ethoxybenzoic acid and methyl 5-aminopicolinate (prepared by treating <strong>[24242-20-4]5-aminopyridine-2-carboxylic acid</strong> with acetyl chloride and methanol) were used instead of 3,5-dichloro~4-(cyclopentyloxy)benzoic acid and methyl 4-aminobenzoate respectively in step (Hi): m/z 355 (M+H)+ (ES+). 1H NMR 400 MHz, DMSO-de) delta: 10.9 (1 H, s), 9.0 (1 H, d), 8.4 (1 H, dd), 8.2 (2H, s), 8.1 (1 H, d), 4.1 (2H, q), 1.4 (3H, t). (The final compound was isolated as a hydrochloride salt.
5-Amino-2- nicotinic acid (6.38 g) was dissolved in methyl alcohol (50 mL) and then cooled to 0 0C in an ice- water bath. Thionyl chloride (8.3 mL) was then added to the solution. The reaction mixture was refluxed for 3O h. After evaporating the methanol, the residue was neutralized with a saturated solution of sodium bicarbonate and was extracted with ethyl acetate. The organic layer was washed with water, brine, dried over sodium sulfate and filtered. The filtrate was concentrated to give 2.31 g of the final ester (Rf: 0.473 min, Condition B, M+H+: 153).
Intermediate 76. 5-aminopyridine-2-carboxylic acid A solution of 5-amino-2-cyanopyridine (10. Og, 83.9mmol) in sulfuric acid (50ml_) was placed in a high pressure vessel and heated to 90 °C for 2h. Then, water was added to the mixture (100ml_) and the reaction was heated to 100 °C for 2 additional hours. The obtained orange solution was poured over a mixture of ice and water and stirring was maintained for 15 min (a pale beige solid precipitated from the solution) and the solid obtained was filtered, washed with cold water and dried under vacuum overnight to afford the title compound (1 1 .7g, 100percent) LRMS (m/z): 139 (M+1 )+
64.68%
With sulfuric acid; water; at 100℃; for 2h;
Synthesis of compound 206.2. The solution of 206.1 (4.0g, 33.61mmol, l .Oeq) in concentrated H2S04 (20ml) was heated at 100 °C for 2h. Further water (20 ml) was added to the reaction mixture and it was heated at 100 °C for 2 h. After completion of reaction, reaction mixture was poured in ice cold water and product was filtered to get pure 206.2 (3.0g, 64.68percent). MS (ES): m/z 138.13 [M+H]+.
With sodium hydroxide; water; In ethanol; at 120℃;
Step 1 5-Amiotano-pyriotadiotane-2-carboxyliotac acid (2-diotaethylamiotano-ethyl)-amiotade o fI H[00274] 5-Aminopyridme-2-carbomtpile (0 2g, mmol) is stirred m a mixture of EtOH (ImL) and48percent aq NaOH (ImL) at 12O0C overnight The solvent is removed in vacuo and the water residue is <n="59"/>washed with EtOAc The water layer is acidified to pH 5 and concentrated to afford the crude 5-ammo- pypidme-2-carboxylic acid (0 23 g, 0 168mmol)
The 5-amino-2-cyanopyridine (4.0 g) was added to sulfuric acid (20 mL) slowly with stirring. The reaction mixture was stirred at 90 0C for 2 h in a sealed tube. The reaction mixture was diluted with water (40 mL) and heating was continued at 100 0C for 2 h. The reaction mixture was cooled to room temperature and was poured into ice. The solid thus separated was filtered, washed with cold water and was dried under vacuum to yield 6.4 g of the desired product (Rf: 0.173 min, Condition B, M+H+: 139).
Step 2 A stirred suspension of <strong>[24242-20-4]3-amino-pyridine-6-carboxylic acid</strong> (25 g) in ethanol (300 mL) at 0° C. was saturated with gaseous hydrogen chloride. The mixture was allowed to warm to 23° C. and heated to reflux for 2 hours. A clear solution was obtained. After cooling to 23° C., the mixture was concentrated in vacuo, neutralized with aqueous NaHCO3 and extracted with ethyl acetate. The organic phase was washed with water, dried over MgSO4, and concentrated in vacuo to give ethyl 3-amino-pyridine-6-carboxylate as a pale yellow solid.
With hydrogenchloride; In 1,4-dioxane; N,N-dimethyl acetamide; at 70℃; for 48h;
Example 19 Methyl 5 - \\4-(( 1 R,2S)-2-isopropylcarbamoyl-cy clopentylamino)-5 -trifluoromethyl- pyrimidin-2-ylaminol -pyridine-2-carboxylate-( 1 -methyl-piperidin-4-yl)-amide 300 mg (0.86 mmol, 1 eq) A-2a are dissolved in 1 mL DMA, 154 mg (1.11 mmol, 1.3 eq) <strong>[24242-20-4]5-aminopyridine-2-carboxylic acid</strong> are added and the reaction mixture is then combined with 492 muL (1.97 mmol, 2.3 eq, 4 M in dioxane) hydrochloric acid. The reaction mixture is stirred for 48 h at 700C, combined directly with RP gel, the volatile constituents are eliminated in vacuo and the product is purified by column chromatography (water/MeCN 78/22 (+ in each case 0.2percent HCOOH) to 60/40 in 15 min). Corresponding product fractions are combined and freed from the solvent by freeze-drying. 11 mg of 5-[4-((lR,2S)-2- isopropylcarbamoyl-cyclopentylamino)-5-trifluoromethyl-pyrimidin-2-ylamino]-pyridine- 2-carboxylic acid are obtained. MS-ESI+: 453 (M+H)+
With diazomethyl-trimethyl-silane; In methanol; diethyl ether; benzene; at 0 - 20℃; for 6h;
5-Amino-pyridine-2-carboxylic acid 1 (5.4 mmol) is dissolved in benzene : MeOH = 3 :1 (40 niL) and cooled in an ice-bath to 00C. To the solution is slowly added 2M TMSCH2N2 in Et2O solution (6.5 mmol). After the addition is complete, the reaction mixture is warmed to rt and stirred for 6 h. After removing the solvent in vacuum, methyl 5-aminopicolinate 2 is obtained and used in the next step without further purification. MS (m/z) (M+l)+: 153.1.
With thionyl chloride; at 0℃;Inert atmosphere; Reflux;
To a solution of 5-aminopicolinic acid (13.5 g, 97.7 mmol) in anhydrous ethanol (200 mL) was added SOCl2 (60.0 mL, 504 mmol) dropwise at 0 C. under N2 atmosphere. The resulting mixture was heated at reflux and stirred overnight. The reaction mixture was concentrated in vacuo. The residue was dissolved in a saturated aqueous NaHCO3 solution so that that pH of the solution was approximately pH 9-10. The reaction mixture was extracted with EtOAc (8×250 mL). The combined organic phases were dried over Na2SO4, filtered, and the filtrate was concentrated in vacuo to afford the title compound as a brown solid (14.3 g, 88%) 1H NMR (CDCl3) delta 8.14 (d, 1H), 7.94 (d, 1H), 6.97 (dd, 1H), 4.41 (q, 2H), 4.16 (br s, 2H), 1.39 (t, 3H)
83%
With thionyl chloride; at 10 - 110℃;
Thionyl chloride (5.2 ml, 71.3 mmol) was added dropwise to <strong>[24242-20-4]5-amino-pyridine-2-carboxylic acid</strong>(4.0 g, 29.0 mmol) in EtOH (30 ml) whilst maintaining the temperature of the mixture below 100C. During the addition the mixture became very thick and more EtOH (20 ml) was added. The mixture was then stirred and heated at 95C overnight. Next day the temperature was increased to 1 100C and the mixture was heated at this temperature overnight. On cooling to rt the mixture was <n="74"/>concentrated to give a solid. Saturated aqueous sodium hydrogen carbonate solution was added followed by saturated aqueous sodium carbonate solution. Ethyl acetate and water were then added. The organic phase was washed with brine, dried and concentrated to give an off white solid (4.0 g, 83 %). 1H NMR (400 MHz, DMSO-J6) delta ppm 1.27 (3 H, t, /=7.10 Hz), 4.22 (2 H, q, 7=6.87 Hz), 6.19 (2 H, s), 6.91 (1 H, dd, 7=8.70, 2.75 Hz), 7.74 (1 H, d, J=8.70 Hz), 7.97 (1 H, d, J=2.29 Hz).
79%
With thionyl chloride; at 0℃; for 19h;Reflux;
To a solution of 5-aminopicolinic acid (194 mg, 1.40 mmol) in ethanol (5 mL), was added thionyl chloride (0.20 mL, 2.80 mmol) at 0 C. The mixture was then stirred under reflux for 19 h, after which time it was cooled to room temperature and the reaction mixture concentrated under reduced pressure. Saturated aqueous sodium carbonate solution was added to the resulting solid to adjust the pH to 9, followed by saturated aqueous sodium hydrogen carbonate. Ethyl acetate (10 mL) and water (10 mL) were added and the organic phase was washed with brine (1 0 mL), dried (Na2SO4), filtered and the filtrate concentrated in vacuo. Ethyl 5-aminopicolinate (184 mg, 79%) was obtained as an off-white solid, with no need for further purification; 1H NMR (500 MHz, MeOD) 6 1 .37 (3H, t, J = 7.1 Hz, CH3), 4.35 (2H, q, J = 7.2 Hz), 7.02 (1H, dd, J = 2.7 and 8.6 Hz, Ar), 7.85 (1H, d, J = 8.6 Hz) and 7.98 (1H, d, J= 2.7 Hz). LRMS(ESI÷) mz 167.2 [M + H].
75%
To a solution of 5-aminopicolinic acid (110; 8.4 g, 60.8 mmol) in ethanol (100 rnL) was added SOCl2 (14.5 g, 120 mmol) at 0 0C. The mixture was stirred under reflux for 12 h. Upon cooling to room temperature, the reaction mixture was concentrated under reduced pressure. Enough saturated aqueous Na2CO3 solution was added to adjust pH = 9. The resulting mixture was filtered and the solids were dried under reduced pressure to afford ethyl 5-aminopicolinate 111 (7.5 g, 75%).
75%
With thionyl chloride; for 12h;Reflux;
To a solution of 5-aminopyridiencarboxylic acid (16; 8.4 g, 60.8 mmol) inethanol ( 100 mL) was added SOO2 (14.5g, 120 mmol) at 0 C. The mixture was refluxed for 1 2 h. The solvent was removed and saturated Na2C03 solution was added to adjust pH=9 and fi ltrated to give a solid. Dried in vacuo to give ethyl 5-aminopicolinate ( 17; 7.5 g? 75%). M S (ESI) calcd forC8H,oN202 (m/z) 166.18.
75%
With thionyl chloride; at 0℃; for 12h;Reflux;
To a solution of <strong>[24242-20-4]5-aminopyridinecarboxylic acid</strong> (8.4 g, 60.8 mmol) in ethanol (100 mL) was added SOCl2 (14.5 g, 120 mmol) at 0 C. The mixture was refluxed for 12 h. The solvent was removed and saturated Na2CO3 solution was added to adjust pH=9 and filtrated to give a solid. The solid was dried in vacuo to give ethyl 5-aminopicolinate (7.5 g, 75%). MS (ESI) calcd for C8H10N2O2 (m/z): 166.18
75%
With thionyl chloride; at 0℃; for 12h;Reflux;
To a solution of 5-aminopyridiencarboxylic acid (8.4 g, 60.8 mmol) in ethanol (100 mL) was added SOCl2 (14.5 g, 120 mmol) at 0 C. The mixture was refluxed for 12 h. The solvent was removed and saturated Na2CO3 solution was added to adjust pH=9 and filtrated to give a solid. The solid was dried in vacuo to give ethyl 5-aminopicolinate (7.5 g, 75%). MS (ESI) calcd for C8H10N2O2 (m/z): 166.18
72%
With hydrogenchloride; at 65℃; for 96h;
Intermediate 77. ethyl 5-aminopyridine-2-carboxylate 5- aminopyridine-2-carboxylic acid (Intermediate 76, 1 1 , 6g, 84.0mmol) was added to a solution of hydrochloric acid (250ml_ of a 1.25 M solution in ethanol) and the mixture was heated to 65 C for four days. Upon complete cosumption of the starting material, the solvent was evaporated and the residue was suspended in water (300ml_). Solid potassium carbonate was added to the mixture until pH=8 was reached and the aqueous phase was extracted with ethyl acetate (3 x 300ml_). The combined organic extracts were washed with brine (500ml_), dried and concentrated under reduced pressure to afford the title compound (10g, 72%) as an orange solid. LRMS (m/z): 167 (M+1 )+
5-amino-N-[6-(1H-indol-4-yl)-1H-indazol-4-yl]-2-pyridinecarboxamide[ No CAS ]
Yield
Reaction Conditions
Operation in experiment
To a solution of delta-amino^-pyridinecarboxylic acid (56mg, 0.40mmol, available from ChemPacific) in DMF (2ml) was added HATU (150mg, 0.40mmol) and DIPEA (0.21 1 ml, <n="119"/>1.21 mmol). The mixture was stirred at room temperature for 20mins then 6-(1 H-indol-4- yl)-1 H-indazol-4-amine (50mg, 0.20mmol) was added and the mixture stirred at room temperature for 18h. The reaction mixture was added to the top of a 2Og aminopropyl cartridge that had been preconditioned with MeOH. The reaction mixture remained on the cartridges for 3 h before being eluted with MeOH. The solvent was removed in vacuo to give a crude residue that was dissolved in DMSO/MeOH (1 :1 ) and purified by Mass Directed Automated Preparative HPLC (Method C). The product was loaded onto a 1g aminopropyl column, eluted with DCM/MeOH (1 :1 ) and the solvent removed under a stream of nitrogen to give the title compound (28mg) as a white solid. LCMS (Method B) Rt = 0.90 min, MH+ = 369
With triethylamine; HATU; In N,N-dimethyl-formamide; at 20℃; for 16h;
5-Amino-pyridine-2-carboxylic acid (leq.), HATU (1.5 eq.) and Et3N (2eq.) are mixed in DMF at room temperature. Cyclopropylamine (l.leq.) is added to the solution and the reaction mixture is stirred at room temperature for 16hrs. Water is added to the reaction. The organic phases are isolated, dried over MgSO/i, filtered and evaporated under vacuum to afford the expected product. In same cases, purification by flash chromatography is required.
With triethylamine; HATU; In N,N-dimethyl-formamide; at 20℃; for 16h;
5-Amino-pyridine-2-carboxylic acid (leq.), HATU (1.5 eq.) and Et3N (2eq.) are mixed in DMF at room temperature, methylamine (l.leq.) is added to the solution and the reaction mixture is stirred at room temperature for 16hrs. Water is added to the reaction. The organic phases are isolated, dried over MgS O4, filtered and evaporated under vacuum to afford the expected product. In same cases, purification by flash chromatography is required.
This compound was prepared via Method C using <strong>[24242-20-4]5-amino-pyridine-2-carboxylic acid</strong> amide prepared by Method N using ammonia. Method N:[00304] 5-Amino-pyridine-2-carboxylic acid (leq.), EDCI (or HATU) (1.5 eq.), HOBt (1.5eq.)(not used with HATU) and Et3N (2eq.) are mixed in DMF (or THF) at room temperature. An appropriate amine (l .leq.) is added to the solution and the reaction mixture is stirred at room temperature for 16hrs. Water is added to the reaction. The organic phases is isolated, dried over MgSO4, filtered and evaporated under vacuum to afford the expected product. In same cases, purification by flash chromatography is required.
260 mg
With ammonium chloride; benzotriazol-1-ol; N-(3-dimethylaminopropyl)-N-ethylcarbodiimide; In N,N-dimethyl-formamide; at 10 - 35℃;
A) 5-aminopyridine-2-carboxamide To a solution of <strong>[24242-20-4]5-aminopyridine-2-carboxylic acid</strong> (2.0 g) in N,N-dimethylformamide (50 mL) were added ammonium chloride (3.9 g), 1-ethyl-3-(3-dimethylaminopropyl)carbodiimide (5.1 mL) and 1-hydroxybenzotriazole (4.4 g), and the mixture was stirred overnight at room temperature. To the reaction mixture was added saturated aqueous sodium hydrogen carbonate solution, and the mixture was extracted with ethyl acetate. The obtained organic layer was washed with saturated brine, and dried over anhydrous sodium sulfate, and the solvent was evaporated under reduced pressure. The residue was purified by silica gel column chromatography (NH, hexane/ethyl acetate) to give the title compound (260 mg). MS(ESI+): [M+H]+ 138.3.