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Structure of 20439-47-8
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CAS No. : | 20439-47-8 |
Formula : | C6H14N2 |
M.W : | 114.19 |
SMILES Code : | N[C@H]1[C@H](N)CCCC1 |
MDL No. : | MFCD00062985 |
InChI Key : | SSJXIUAHEKJCMH-PHDIDXHHSA-N |
Pubchem ID : | 43806 |
GHS Pictogram: |
![]() ![]() |
Signal Word: | Danger |
Hazard Statements: | H227-H303-H314-H335 |
Precautionary Statements: | P210-P261-P264-P271-P280-P301+P330+P331-P303+P361+P353-P304+P340+P310-P305+P351+P338+P310-P312-P363-P370+P378-P403+P233-P403+P235-P405-P501 |
Class: | 8 |
UN#: | 2735 |
Packing Group: | Ⅲ |
Num. heavy atoms | 8 |
Num. arom. heavy atoms | 0 |
Fraction Csp3 | 1.0 |
Num. rotatable bonds | 0 |
Num. H-bond acceptors | 2.0 |
Num. H-bond donors | 2.0 |
Molar Refractivity | 34.26 |
TPSA ? Topological Polar Surface Area: Calculated from |
52.04 ?2 |
Log Po/w (iLOGP)? iLOGP: in-house physics-based method implemented from |
1.49 |
Log Po/w (XLOGP3)? XLOGP3: Atomistic and knowledge-based method calculated by |
-0.32 |
Log Po/w (WLOGP)? WLOGP: Atomistic method implemented from |
0.21 |
Log Po/w (MLOGP)? MLOGP: Topological method implemented from |
0.21 |
Log Po/w (SILICOS-IT)? SILICOS-IT: Hybrid fragmental/topological method calculated by |
0.15 |
Consensus Log Po/w? Consensus Log Po/w: Average of all five predictions |
0.35 |
Log S (ESOL):? ESOL: Topological method implemented from |
-0.35 |
Solubility | 51.4 mg/ml ; 0.45 mol/l |
Class? Solubility class: Log S scale |
Very soluble |
Log S (Ali)? Ali: Topological method implemented from |
-0.31 |
Solubility | 55.7 mg/ml ; 0.488 mol/l |
Class? Solubility class: Log S scale |
Very soluble |
Log S (SILICOS-IT)? SILICOS-IT: Fragmental method calculated by |
-0.31 |
Solubility | 55.8 mg/ml ; 0.489 mol/l |
Class? Solubility class: Log S scale |
Soluble |
GI absorption? Gatrointestinal absorption: according to the white of the BOILED-Egg |
High |
BBB permeant? BBB permeation: according to the yolk of the BOILED-Egg |
No |
P-gp substrate? P-glycoprotein substrate: SVM model built on 1033 molecules (training set) |
No |
CYP1A2 inhibitor? Cytochrome P450 1A2 inhibitor: SVM model built on 9145 molecules (training set) |
No |
CYP2C19 inhibitor? Cytochrome P450 2C19 inhibitor: SVM model built on 9272 molecules (training set) |
No |
CYP2C9 inhibitor? Cytochrome P450 2C9 inhibitor: SVM model built on 5940 molecules (training set) |
No |
CYP2D6 inhibitor? Cytochrome P450 2D6 inhibitor: SVM model built on 3664 molecules (training set) |
No |
CYP3A4 inhibitor? Cytochrome P450 3A4 inhibitor: SVM model built on 7518 molecules (training set) |
No |
Log Kp (skin permeation)? Skin permeation: QSPR model implemented from |
-7.22 cm/s |
Lipinski? Lipinski (Pfizer) filter: implemented from |
0.0 |
Ghose? Ghose filter: implemented from |
None |
Veber? Veber (GSK) filter: implemented from |
0.0 |
Egan? Egan (Pharmacia) filter: implemented from |
0.0 |
Muegge? Muegge (Bayer) filter: implemented from |
1.0 |
Bioavailability Score? Abbott Bioavailability Score: Probability of F > 10% in rat |
0.55 |
PAINS? Pan Assay Interference Structures: implemented from |
0.0 alert |
Brenk? Structural Alert: implemented from |
0.0 alert: heavy_metal |
Leadlikeness? Leadlikeness: implemented from |
No; 1 violation:MW<1.0 |
Synthetic accessibility? Synthetic accessibility score: from 1 (very easy) to 10 (very difficult) |
1.81 |
* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
Heating / reflux; | Chiral ligands were prepared by refluxing 1 ,2-cyclohexyldiamines {R,R and S1S) with 2,4 di-.erf-butyl salicylaldehyde | |
In ethanol; for 12h;Reflux; | 1.14 g of (R,R)-1,2-cyclohexanediamine was dissolved in 20 mL of ethanol.4.7 g of 3,5-di-tert-butylsalicylaldehyde in 30 mL of ethanol solution was slowly added dropwise thereto.The resulting mixed solution was refluxed for 12 h.Obtaining a reaction mixture; removing the reaction solvent by filtration,The obtained reaction product ethanol was recrystallized to obtain a Schiff base ligand.The present invention performs elemental analysis on the obtained Schiff base compound,Obtaining the content of each atom therein,The results are as follows: Elem.Anal. (%): Calcd. C 79.07; H 9.95; N5.12.Found: C 78.71; H 9.85; N 4.77. this means,The Schiff base ligand obtained in this embodiment has the structure of formula II,Wherein Y is ((R,R)-1,2-cyclohexanediamine) and R is a tert-butyl group. | |
General procedure: In a round bottomed flask filled with argon, (1R,2R)-trans-1,2-diaminocyclohexane (R,R-DACH) (1 equiv.) and potassium carbonate (0.9 equiv.) were dissolved in 3mL of distilled water and heated for 30min at 80-85C. The exact amounts are given below. Subsequently, a solution of aldehyde (2 equiv.) in 45mL of ethanol was added dropwise and the reaction mixture was stirred for 3h. The solution turned yellow. After this time, ethanol was evaporated and 10mL of distilled water was added. Water solution was extracted with dichloromethane 3 times with 30mL of the solvent. The combined extracts were washed with brine and dried with anhydrous Na2SO4. After filtration of the drying agent, solution was evaporated to dryness. The resulting salens were subsequently reduced without purification. The resulting salens were dissolved in methanol (300mL or more if it was necessary for complete dissolution). To the salen solution, sodium borohydride (4 equiv.) was added in portions at room temperature. After addition of NaBH4, the reaction mixture was stirred for 3h and then 30mL of water was added and stirred for 15min. The alcohol was evaporated under vacuum and the water residue was extracted with DCM three times for 30mL. Organic phase was dried with Na2SO4 and after removing of the desiccant, the solvent was evaporated. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
93% | Synthesis of (lR,2R)-N,N'-dibenzylcyclohexane-l ,2-diamine; Benzaldehyde (4.65 g, 43.8 mmol) was added to a solution of (R,2R)-,2- diaminocyclohexane (2.50 g, 21.9 mmol) in methanol (13 ml). The reaction mixture was stirred at 700C for 6 h. Then NaBH4 (2.00 g, 52.7 mmol) was added in small portions at 700C during 30 minutes. After stirring for 3.5 hours at room temperature, the solvent was evaporated. The residue was taken up in dichloromethane and extracted with an aqueous solution of HCl (IN), the aqueous phase was separated, then NaOH (10% aqueous solution) was added to this aqueous phase to reach a pH of 10. Extraction with diethylether (3x), drying (Na2SO4) and concentrating gave 6.02 g (93%) of the desired diamine. 1H-NMR: 7.35-7.24 (m, 8 H); 7.24-7.16 (m, 2 H); 3.78 (d, J = 13.3, 2 H); 3.57 (d, J = 13.3, 2 H); 2.29-2.14 (m, 4 H); 2.02 (d, J = 13.3, 2 H); 1.68-1.57 (m, 2 H); 1.18-1.08 (m, 2 H); 1.06-0.92 (m, 2 H). <n="26"/>13C-NMR: 141.58 (s); 127.96 (d); 127.69 (d); 126.31 (d); 126.28 (d); 60.17 (d); 49.92 (t); 30.65 (t); 24.51 (t). | |
Benzaldehyde (12.72 g, 120 mmol) was added dropwise over a period of 2 minutes to a solution of (R,R)-cyclohexane-1,2-diamine (6.84 g, 60 mmol) in 100 mL of anhydrous MeOH at refluxing temperature. After stirring for 30 min, the solution was allowed to cool to room temperature and NaBH3CN (4.8 g, 126 mmol) was added in portions. After the vigorous effervescence subsided down, the mixture was brought to refluxing and stirred for 20 min. The reaction was quenched by water and extracted with dichloromethane. The organic phase was dried and concentrated to give 16.95 g of crude product (yield 96%) which was used in the next step reaction without further purification. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
77% | With sodium t-butanolate;2,2'-bis-(diphenylphosphino)-1,1'-binaphthyl; bis(dibenzylideneacetone)-palladium(0); In alpha,alpha,alpha-trifluorotoluene; at 120℃; for 0.166667h;Microwave irradiation; | H,4CL6MEOQUIN-BAM. A 2-5 mL muW vial was charged with (R,R)-diaminocyclohexane (125.2 mg, 1.096 mmol), <strong>[70049-46-6]2,4-dichloro-<strong>[70049-46-6]6-methoxyquinoline</strong></strong> (500 mg, 2.190 mmol), Pd(dba)2 (12.6 mg, 22.0 mumol), rac-BINAP (13.6 mg, 22.0 mumol), and sodium tert-butoxide (316.2 mg, 3.290 mmol). See Wagaw et al., 1997, which is incorporated herein by reference. Trifluoromethylbenzene (3.8 mL) was added and the resulting suspension was heated at 120° C. and stirred in the microwave for 10 min. The reaction mixture was triturated with CH2Cl2 and filtered. The filtrate was concentrated and purified by column chromatography (10-20percent ethyl acetate in hexanes) to provide a yellow solid (420.3 mg, 77percent) that was pure by 1H NMR; [alpha]D20 +610 (c 0.18, CHCl3); Rf=0.18 (20percent EtOAc/hexanes); IR (film) 3218, 2925, 1605, 1495 cm-1; 1H NMR (600 MHz, CDCl3, 325 K) delta 7.64 (d, J=9.0 Hz, 2H), 7.30 (d, J=3.0 Hz, 2H), 7.25 (dd, J=9.0, 3.0 Hz, 2H), 6.38 (br s, 2H), 5.72 (br s, 2H), 4.05-3.90 (m, 2H), 3.91 (s, 6H), 2.39-2.25 (m, 2H), 1.90-1.80 (m, 2H), 1.55-1.35 (m, 4H); 13C NMR (150 MHz, CDCl3, 325 K) ppm 155.5, 155.4, 144.0, 141.4, 127.6, 121.9, 121.8, 111.8, 103.7, 56.1, 55.6, 33.0, 24.9; HRMS (ESI): Exact mass calcd for C26H27Cl2N4O2 [M+H]+ 497.1511. found 497.1500. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
62% | With sodium t-butanolate;2,2'-bis-(diphenylphosphino)-1,1'-binaphthyl; bis(dibenzylideneacetone)-palladium(0); In toluene; at 70℃; for 3.5h; | 4Cl8MeOQuinBAM. A 100 mL round bottom flask was charged with Pd(dba)2 (25.2 mg, 43.8 mumol), rac-BINAP (27.3 mg, 43.8 mumol), sodium tert-butoxide (632.0 mg, 6.576 mmol), (R,R)-diaminocyclohexane (250.3 mg, 2.192 mmol), and the quinoline (1.0000 g, 4.385 mmol).1 Toluene (22 mL) was added, and the reaction mixture was heated at 70 C. and stirred for 3.5 h. The reaction was cooled to room temperature, diluted with CH2Cl2, and filtered through celite. The filtrate was concentrated and purified by column chromatography (25-50% ethyl acetate in hexanes) to provide a yellow solid (642.6 mg, 62%). [alpha]D20 +530 (c 0.16, CHCl3); Rf=0.31 (50% EtOAc/hexanes); IR (film) 3240, 2933, 1607, 1545 cm-1; 1H NMR (400 MHz, CDCl3) delta 7.54 (dd, J=8.4, 0.8 Hz, 2H), 7.17 (dd, J=7.6, 0.8 Hz, 2H), 7.01 (dd, J=7.6, 0.8 Hz, 2H), 6.59 (s, 2H), 6.38 (br s, 2H), 4.15-3.95 (m, 2H), 4.04 (s, 6H), 2.45-2.30 (m, 2H), 1.85-1.70 (m, 2H), 1.50-1.30 (m, 4H); 13C NMR (150 MHz, CDCl3) ppm 155.9, 153.2, 142.1, 140.0, 122.2, 121.9, 116.2, 112.7, 109.8, 56.6, 56.2, 32.5, 24.7; HRMS (ESI): Exact mass calcd for C26H27Cl2N4O2 [M+H]+ 497.1511. found 497.1521. 1 Adapted from Wagaw, S.; Rennels, R.; Buchwald, S. J Am. Chem. Soc. 1997, 119, 8451-8458. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With amberlyst 15; In toluene; for 12h;Molecular sieve; Inert atmosphere; Reflux; | General procedure: Chiral bisformamides 1a-j were prepared as previously reported.11 (1R,2R)-1,2-Cyclohexanediamine (10 mmol), aldehyde (25 mmol), MS 4 A (4 g) and amberlyst 15 (0.2 g) in toluene (120 mL) were refluxed for 12 h, and the reaction mixture was cooled to room temperature. After the mixture was filtered, the solvent was concentrated and the residue was recrystallized from hexane to afford the corresponding imine. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
40% | l-Benzyl-3-piperidone hydrochloride monohydrate (5.93 g, 26.3 mmol) was partitioned between a saturated aqueous NaHCC solution (30ml) and (?(? (50 mL). The organic layer was separated and dried over a2S04 and filtered. The filtrated was collected and (lR,2R)-cyclohexane-l,2-diamine (3 g, 26.3 mmol) was added followed by sodium triacetoxy borohydride (8.35 g, 39.4 mmol). The reaction was stirred at rt overnight. After this time, the reaction was quenched with water (2ml). The resulting solution was washed with saturated aqueous NaHCC (50 ml) and saturated NaCl (50 ml). The organic layer was dried over MgS04, filtered and concentrated. The resulting residue was purified by RP Prep-HPLC. The desired fractions containing the product were concentrated to give the product, (lR,2R)- l-(l-benzylpiperidin-3-yl)cyclohexane- 1,2-diamine (3.01 g, 10.47 mmol, 40 % yield) as a trifluoroacetate salt and as a white solid. ? NMR (500 MHz, MeOH-d3) delta ppm 7.54-7.36 (m, 5H), 4.27-3.99 (m, 2H), 3.24 -2.94 (m, 3H), 2.69 (d, J=9.90 Hz, 2H), 2.46-2.27 (m, 1H); 2.25-2.02 (m, 2H); 2.03-1.83 (m, 2H); 1.83-1.62 (m, 4H); 1.47-1.19 (m, 4H); 1.05 (d, J=l 1.55 Hz, 1H). 13C NMR (126 MHz, MeOH-d3) 5 ppm 132.27, 130.75, 130.25, 62.31, 58.81, 56.46, 53.57, 32.76, 31.33, 25.99, 25.73, 25.40 |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
82% | With 5%-palladium/activated carbon; at 150℃; for 24h;Inert atmosphere; Sealed tube; | General procedure: In a pres-sure tube were successively added under inert atmosphere, 1eq ofdiamine (2 mmol, 0.23 g), 3eq of -tetralone (6 mmol, 0.9 g) and2.5 mol% of Pd/C (5%) (0.05 mmol, 107 mg). Then, the tube wassealed and placed in preheated oil bath (T = 150C). After 24 h ofstirring at 800 rpm the crude was cooling down and diluted in amixture (50/50) of CH2Cl2and CH3OH then filtered off on Milli-pore filter (Durapore filter 0.01 m). The solvents were removedunder vacuum and the crude material was purified by flash col-umn chromatography on silica gel (Eluent cyclohexane (500 mL),then cyclohexane/ethyl acetate 90:10) |
A360682 [21436-03-3]
(1S,2S)-Cyclohexane-1,2-diamine
Reason: Optical isomers
A1471233 [21436-03-3]
(1S,2S)-Cyclohexane-1,2-diamine
Reason: Optical isomers