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CAS No. : | 174148-03-9 |
Formula : | C25H28N2O6 |
M.W : | 452.50 |
SMILES Code : | O=C(O)[C@H]1N(C(OC(C)(C)C)=O)C[C@@H](NC(OCC2C3=CC=CC=C3C4=CC=CC=C24)=O)C1 |
MDL No. : | MFCD00673782 |
InChI Key : | UPXRTVAIJMUAQR-BTYIYWSLSA-N |
Pubchem ID : | 2756134 |
GHS Pictogram: |
![]() |
Signal Word: | Warning |
Hazard Statements: | H315-H319-H335 |
Precautionary Statements: | P261-P305+P351+P338 |
Num. heavy atoms | 33 |
Num. arom. heavy atoms | 12 |
Fraction Csp3 | 0.4 |
Num. rotatable bonds | 9 |
Num. H-bond acceptors | 6.0 |
Num. H-bond donors | 2.0 |
Molar Refractivity | 125.23 |
TPSA ? Topological Polar Surface Area: Calculated from |
105.17 ?2 |
Log Po/w (iLOGP)? iLOGP: in-house physics-based method implemented from |
2.48 |
Log Po/w (XLOGP3)? XLOGP3: Atomistic and knowledge-based method calculated by |
3.77 |
Log Po/w (WLOGP)? WLOGP: Atomistic method implemented from |
3.61 |
Log Po/w (MLOGP)? MLOGP: Topological method implemented from |
2.6 |
Log Po/w (SILICOS-IT)? SILICOS-IT: Hybrid fragmental/topological method calculated by |
2.36 |
Consensus Log Po/w? Consensus Log Po/w: Average of all five predictions |
2.96 |
Log S (ESOL):? ESOL: Topological method implemented from |
-4.7 |
Solubility | 0.00912 mg/ml ; 0.0000202 mol/l |
Class? Solubility class: Log S scale |
Moderately soluble |
Log S (Ali)? Ali: Topological method implemented from |
-5.67 |
Solubility | 0.000963 mg/ml ; 0.00000213 mol/l |
Class? Solubility class: Log S scale |
Moderately soluble |
Log S (SILICOS-IT)? SILICOS-IT: Fragmental method calculated by |
-5.23 |
Solubility | 0.00265 mg/ml ; 0.00000586 mol/l |
Class? Solubility class: Log S scale |
Moderately soluble |
GI absorption? Gatrointestinal absorption: according to the white of the BOILED-Egg |
High |
BBB permeant? BBB permeation: according to the yolk of the BOILED-Egg |
No |
P-gp substrate? P-glycoprotein substrate: SVM model built on 1033 molecules (training set) |
Yes |
CYP1A2 inhibitor? Cytochrome P450 1A2 inhibitor: SVM model built on 9145 molecules (training set) |
No |
CYP2C19 inhibitor? Cytochrome P450 2C19 inhibitor: SVM model built on 9272 molecules (training set) |
No |
CYP2C9 inhibitor? Cytochrome P450 2C9 inhibitor: SVM model built on 5940 molecules (training set) |
Yes |
CYP2D6 inhibitor? Cytochrome P450 2D6 inhibitor: SVM model built on 3664 molecules (training set) |
No |
CYP3A4 inhibitor? Cytochrome P450 3A4 inhibitor: SVM model built on 7518 molecules (training set) |
Yes |
Log Kp (skin permeation)? Skin permeation: QSPR model implemented from |
-6.38 cm/s |
Lipinski? Lipinski (Pfizer) filter: implemented from |
0.0 |
Ghose? Ghose filter: implemented from |
None |
Veber? Veber (GSK) filter: implemented from |
0.0 |
Egan? Egan (Pharmacia) filter: implemented from |
0.0 |
Muegge? Muegge (Bayer) filter: implemented from |
0.0 |
Bioavailability Score? Abbott Bioavailability Score: Probability of F > 10% in rat |
0.56 |
PAINS? Pan Assay Interference Structures: implemented from |
0.0 alert |
Brenk? Structural Alert: implemented from |
1.0 alert: heavy_metal |
Leadlikeness? Leadlikeness: implemented from |
No; 1 violation:MW<3.0 |
Synthetic accessibility? Synthetic accessibility score: from 1 (very easy) to 10 (very difficult) |
4.54 |
* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
93% | With N-ethyl-N,N-diisopropylamine; HATU; In N,N-dimethyl-formamide; at 20℃; for 3h; | To a solution of (2S,4S)-4-(((9H-fluoren-9-yl)methoxy)carbonylamino)-1-(tert-butoxycarbonyl)pyrrolidine-2-carboxylic acid (10 g, 22.2 mmol), (R)-1,2,3,4-tetrahydronaphthalen-1-amine (3.26 g, 22.2 mmol) and DIEA (14.28 g, 111 mmol) in DMF (100 mL) was added HATU (9.26 g, 24.4 mmol). The solution was stirred at room temperature for 3 h. The reaction was quenched by the addition of 200 mL H2O and then extracted with ethyl acetate (200 mL x 3). The combined organic layer was washed with brine, dried over anhydrous Na2SO4 and concentrated under vacuum. The crude residue was purified by flash column chromatography with 10~50% ethyl acetate in petroleum ether to afford (2S,4S)-tert-butyl 4-(((9H-fluoren-9-yl)methoxy)carbonylamino)-2-((R)-1,2,3,4-tetrahydronaphthalen-1-ylcarbamoyl)pyrrolidine-1-carboxylate (12.0 g, 93%) as a white solid. MS (ESI) calculated for (C35H39N3O5) [M+H]+, 582.3; found, 582.0. |
87% | To a solution of (2S,45)-Boc-gamma-(Fmoc-amino)-proline (Chem-Impex, 6.00 g, 13.3 mmol) in DMF (20 mL) at 0 C were added EDC (3.05 g, 15.9 mmol), HOAt (2.17 g, 15.9 mmol) and NMM (4.38 mL, 39.8 mmol). The reaction mixture was stirred at ice bath temperature for 20 min then treated with a solution of (R)- 1,2,3, 4- tetrahydronaphthalen- 1 -amine (Alfa Aesar, 2.15 g, 14.6 mmol) in DMF (2 mL). The reaction mixture was stirred at rt for 1 h and cold water (100 mL) was added to the reaction mixture. The solid that formed was collected by filtration and washed with cold water (100 mL). The solid was dissolved in (( (200 mL) and the organic solution was washed with 5% aq. citric acid solution and brine, dried over MgS04, and filtered. The filtrate was concentrated in vacuo. The residue was dissolved in CH2CI2 and purified by flash column chromatography (gradient elution from 10 to 30% EtOAc in CH2CI2) provided the title compound (6.70 g, 87%) as a light tan solid. *H NMR (400 MHz, CDCI3) δ 7.79 (d, J= 7.5 Hz, 2H), 7.67 (d, J= 7.3 Hz, 2H), 7.42 (td, J= 7.2, 4.0 Hz, 2H), 7.37 - 7.03 (m, 6H), 5.22 (br. s., 1H), 4.57 - 4.23 (m, 5H), 3.68 - 3.49 (m, 2H), 2.91 - 2.74 (m, 2H), 2.52 (d, J= 13.4 Hz, 1H), 2.35 - 2.21 (m, 1H), 2.14 (d, J= 5.1 Hz, 1H), 1.97 - 1.80 (m, 3H), 1.44 (s, 9H); MS(ESI+) m/z 582.2 (M+H)+ | |
87% | To a solution of (2S,4S)-Boc-4-(Fmoc-amino)-proline (Chem-Impex, 6.00 g, 13.3 mmol) in DMF (20 mL) at 0 C were added EDC (3.05 g, 15.9 mmol), HOAt (2.17 g, 15.9 mmol) and NMM (4.38 mL, 39.8 mmol). The reaction mixture was stirred at ice bath temperature for 20 min then treated with a solution of (R)- 1 ,2, 3,4- tetrahydronaphthalen-1 -amine (Alfa Aesar, 2.15 g, 14.6 mmol) in DMF (2 mL). The reaction mixture was stirred at rt for 1 h and cold water (100 mL) was added to the reaction mixture. The solid that formed was collected by filtration and washed with cold water (100 mL). The solid was dissolved in CH2CI2 (200 mL) and the organic solution was washed with 5% aq. citric acid solution and brine, dried over MgS04, and filtered. The filtrate was concentrated in vacuo. The residue was dissolved in CH2C12 and purified by flash column chromatography (gradient elution from 10 to 30% EtOAc in CH2C12)provided the title compound (6.70 g, 87%) as a light tan solid. 1H NMR (400 MHz, CDCls) δ 7.79 (d, J= 7.5 Hz, 2H), 7.67 (d, J= 7.3 Hz, 2H), 7.42 (td, J= 7.2, 4.0 Hz, 2H), 7.37 - 7.03 (m, 6H), 5.22 (br. s., 1H), 4.57 - 4.23 (m, 5H), 3.68 - 3.49 (m, 2H), 2.91 - 2.74 (m, 2H), 2.52 (d, J= 13.4 Hz, 1H), 2.35 - 2.21 (m, 1H), 2.14 (d, J= 5.1 Hz, 1H), 1.97 - 1.80 (m, 3H), 1.44 (s, 9H); MS(ESI+) m/z 582.2 (M+ |
87% | A) (2S,4S)-tert-Butyl 4-((((9H-fluoren-9-yl)methoxy)carbonyl)amino)-2-(((R)- 1 ,2,3 ,4-tetrahydronaphthalen- 1 -yl)carbamoyl)pyrrolidine- 1 -carboxylate [00147] To a solution of (2S,4S)-Boc-gamma-(Fmoc-amino)-proline (Chem-Impex, 6.00 g, 13.3 mmol) in DMF (20 mL) at 0 C were added EDC (3.05 g, 15.9 mmol), HOAt (2.17 g, 15.9 mmol) and 4-methylmorpholine (4.38 mL, 39.8 mmol). The reaction mixture was stirred at ice bath temperature for 20 min then treated with a solution of (R)- 1,2,3,4-tetrahydronaphthalen-l -amine (ALFA AESAR, 2.15 g, 14.6 mmol) in DMF (2 mL). The reaction mixture was stirred at rt for 1 h and cold water (100 mL) was added to the reaction mixture. The solid that formed was collected by filtration and washed with cold water (100 mL). The solid was dissolved in CH2CI2 (200 mL) and the organic solution was washed with 5% aq. citric acid solution and brine, dried over MgS04, and filtered. The filtrate was concentrated in vacuo. The residue was dissolved in CH2CI2 and purified by flash column chromatography (gradient elution from 10 to 30% EtOAc in CH2CI2) provided the title compound (6.7 g, 87%) as a light tan solid. XH NMR (400 MHz, CDCI3) δ 7.79 (d, J= 7.5 Hz, 2H), 7.67 (d, J= 7.3 Hz, 2H), 7.42 (td, J= 7.2, 4.0 Hz, 2H), 7.37 - 7.03 (m, 6H), 5.22 (br. s., 1H), 4.57 - 4.23 (m, 5H), 3.68 - 3.49 (m, 2H), 2.91 - 2.74 (m, 2H), 2.52 (d, J= 13.4 Hz, 1H), 2.35 - 2.21 (m, 1H), 2.14 (d, J= 5.1 Hz, 1H), 1.97 - 1.80 (m, 3H), 1.44 (s, 9H); MS(ESI+) m/z 582.2 (M+H)+. | |
87% | To a solution of (2S,4S)-Boc-4-(Fmoc-amino)-proline (Chem-Impex, 6.00 g, 13.3 mmol) in DMF (20 mL) at 0 C. were added EDC (3.05 g, 15.9 mmol), HOAt (2.17 g, 15.9 mmol) and NMM (4.38 mL, 39.8 mmol). The reaction mixture was stirred at ice bath temperature for 20 min then treated with a solution of (R)-1,2,3,4-tetrahydronaphthalen-1-amine (ALFA AESAR, 2.15 g, 14.6 mmol) in DMF (2 mL). The reaction mixture was stirred at rt for 1 h and cold water (100 mL) was added to the reaction mixture. The solid that formed was collected by filtration and washed with cold water (100 mL). The solid was dissolved in CH2Cl2 (200 mL) and the organic solution was washed with 5% aq. citric acid solution and brine, dried over MgSO4, and filtered. The filtrate was concentrated in vacuo. The residue was dissolved in CH2Cl2 and purified by flash column chromatography (gradient elution from 10 to 30% EtOAc in CH2Cl2) provided the title compound (6.70 g, 87%) as a light tan solid. 1H NMR (400 MHz, CDCl3) δ 7.79 (d, J=7.5 Hz, 2H), 7.67 (d, J=7.3 Hz, 2H), 7.42 (td, J=7.2, 4.0 Hz, 2H), 7.37-7.03 (m, 6H), 5.22 (br. s., 1H), 4.57-4.23 (m, 5H), 3.68-3.49 (m, 2H), 2.91-2.74 (m, 2H), 2.52 (d, J=13.4 Hz, 1H), 2.35-2.21 (m, 1H), 2.14 (d, J=5.1 Hz, 1H), 1.97-1.80 (m, 3H), 1.44 (s, 9H); MS(ESI+) m/z 582.2 (M+H)+. | |
87% | To a solution of (2S,4S)-l3oc-gamma-(Fmoc- amino)-proline (Chem-Impex, 6.00 g, 13.3 mmol) in DMF (20 mE) at 00 C. were added EDC (3.05 g, 15.9 mmol), HOAt (2.17 g, 15.9 mmol) and NMM (4.38 mE, 39.8 mmol). The reaction mixture was stirred at ice bath temperature for 20 mm then treated with a solution of (R)-1 ,2, 3,4-tetrahydronaphthalen- i-amine (Alfa Aesar, 2.15 g, 14.6 mmol) in DMF (2 mE). The reaction mixture was stirred at it for 1 hand cold water (100 mE) was added to the reaction mixture. The solid that formed was collected by filtration and washed with cold water (100 mE). The solid was dissolved in CH2C12 (200 mE) and the organic solution was washed with 5% aq. citric acid solution and brine, dried over MgSO4, and filtered. The filtrate was concentrated in vacuo. The residue was dissolved in CH2C12 and purified by flash colunm chromatography (gradient elution from 10 to 30% EtOAc in CH2C12) provided the title compound (6.70 g, 87%) as a light tan solid. ‘H NMR (400 MHz, CDC13) ? 7.79 (d, J=7.5 Hz, 2H), 7.67 (d, J7.3 Hz, 2H), 7.42 (td, J=7.2, 4.0 Hz, 2H), 7.37-7.03 (m, 6H), 5.22 (bt s., 1H), 4.57-4.23 (m, 5H), 3.68-3.49 (m, 2H), 2.91-2.74 (m, 2H), 2.52 (d, J=13.4 Hz, 1H), 2.35-2.21 (m, 1H), 2.14 (d, J=5.i Hz, 1H), 1.97- 1.80 (m, 3H), 1.44 (s, 9H); MS(ESI) mlz 582.2 (M+H). | |
9.6 g | With N-ethyl-N,N-diisopropylamine; HATU; In N,N-dimethyl-formamide; at 0℃; for 4h; | To a solution of (2S,4S )-4-(9H-fluoren-9 -ylmethoxycarbonylamino)-pyrrolidine- 1,2-dicarboxylic acid 1-tert-butyl ester (Aldrich) (7.5 g, 16.593 mmol) in DMF (100 mL) were addedHATU (6.93 g, 18.252 mmol) and DIPEA (14.36 mL, 82.965 mmol) and the mixture was cooled to 0 C. (R)-(1,2,3,4-tetrahydro-naphthalen-1-yl)amine (2.44 g, 16.593 mmol) was added dropwise and the cooling bath removed. After 4 h the mixture was diluted with ethyl acetate, washed with water, dried over sodium sulfate and concentrated to afford the title compound as an off white solid (9.6 g) which was used without purification. LC-MS: 582 (M+H). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
93% | With N-ethyl-N,N-diisopropylamine; N-[(dimethylamino)-3-oxo-1H-1,2,3-triazolo[4,5-b]pyridin-1-yl-methylene]-N-methylmethanaminium hexafluorophosphate; In N,N-dimethyl-formamide; at 20℃; for 3h; | To a solution of (2S,4S)-4-(((9H-fluoren-9-yl)methoxy)carbonylamino)-l-(tert- butoxycarbonyl)pyrrolidine-2-carboxylic acid (10 g, 22.2 mmol), (R)-l,2,3,4- tetrahydronaphthalen-l -amine (3.26 g, 22.2 mmol) and DIEA (14.28 g, 111 mmol) in DMF (100 mL) was added HATU (9.26 g, 24.4 mmol). The solution was stirred at room temperature for 3 h. The reaction was quenched by the addition of 200 mL H20 and then extracted with ethyl acetate (200 mL x 3). The combined organic layer was washed with brine, dried over anhydrous Na2S04 and concentrated under vacuum. The crude residue was purified by flash column chromatography with 10-50% ethyl acetate in petroleum ether to afford (2S,4S)-tert-butyl 4-(((9H-fluoren-9-yl)methoxy)carbonylamino)-2-((R)-l,2,3,4- tetrahydronaphthalen-l-ylcarbamoyl)pyrrolidine-l-carboxylate (12.0 g, 93%) as a white solid. MS (ESI) calculated for (C35H39N3O5) [M+H]+, 582.3; found, 582.0. |