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Chemical Structure| 17407-55-5 Chemical Structure| 17407-55-5

Structure of 17407-55-5

Chemical Structure| 17407-55-5

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CAS No.: 17407-55-5

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Product Details of [ 17407-55-5 ]

CAS No. :17407-55-5
Formula : C5H10O3
M.W : 118.13
SMILES Code : CC(C)[C@H](O)C(O)=O
MDL No. :MFCD00066443
InChI Key :NGEWQZIDQIYUNV-BYPYZUCNSA-N
Pubchem ID :853180

Safety of [ 17407-55-5 ]

GHS Pictogram:
Signal Word:Warning
Hazard Statements:H315-H319-H335
Precautionary Statements:P261-P305+P351+P338

Computational Chemistry of [ 17407-55-5 ] Show Less

Physicochemical Properties

Num. heavy atoms 8
Num. arom. heavy atoms 0
Fraction Csp3 0.8
Num. rotatable bonds 2
Num. H-bond acceptors 3.0
Num. H-bond donors 2.0
Molar Refractivity 29.08
TPSA ?

Topological Polar Surface Area: Calculated from
Ertl P. et al. 2000 J. Med. Chem.

57.53 ?2

Lipophilicity

Log Po/w (iLOGP)?

iLOGP: in-house physics-based method implemented from
Daina A et al. 2014 J. Chem. Inf. Model.

0.97
Log Po/w (XLOGP3)?

XLOGP3: Atomistic and knowledge-based method calculated by
XLOGP program, version 3.2.2, courtesy of CCBG, Shanghai Institute of Organic Chemistry

0.5
Log Po/w (WLOGP)?

WLOGP: Atomistic method implemented from
Wildman SA and Crippen GM. 1999 J. Chem. Inf. Model.

0.09
Log Po/w (MLOGP)?

MLOGP: Topological method implemented from
Moriguchi I. et al. 1992 Chem. Pharm. Bull.
Moriguchi I. et al. 1994 Chem. Pharm. Bull.
Lipinski PA. et al. 2001 Adv. Drug. Deliv. Rev.

0.01
Log Po/w (SILICOS-IT)?

SILICOS-IT: Hybrid fragmental/topological method calculated by
FILTER-IT program, version 1.0.2, courtesy of SILICOS-IT, http://www.silicos-it.com

-0.3
Consensus Log Po/w?

Consensus Log Po/w: Average of all five predictions

0.25

Water Solubility

Log S (ESOL):?

ESOL: Topological method implemented from
Delaney JS. 2004 J. Chem. Inf. Model.

-0.76
Solubility 20.7 mg/ml ; 0.176 mol/l
Class?

Solubility class: Log S scale
Insoluble < -10 < Poorly < -6 < Moderately < -4 < Soluble < -2 Very < 0 < Highly

Very soluble
Log S (Ali)?

Ali: Topological method implemented from
Ali J. et al. 2012 J. Chem. Inf. Model.

-1.28
Solubility 6.23 mg/ml ; 0.0527 mol/l
Class?

Solubility class: Log S scale
Insoluble < -10 < Poorly < -6 < Moderately < -4 < Soluble < -2 Very < 0 < Highly

Very soluble
Log S (SILICOS-IT)?

SILICOS-IT: Fragmental method calculated by
FILTER-IT program, version 1.0.2, courtesy of SILICOS-IT, http://www.silicos-it.com

0.5
Solubility 374.0 mg/ml ; 3.17 mol/l
Class?

Solubility class: Log S scale
Insoluble < -10 < Poorly < -6 < Moderately < -4 < Soluble < -2 Very < 0 < Highly

Soluble

Pharmacokinetics

GI absorption?

Gatrointestinal absorption: according to the white of the BOILED-Egg

High
BBB permeant?

BBB permeation: according to the yolk of the BOILED-Egg

No
P-gp substrate?

P-glycoprotein substrate: SVM model built on 1033 molecules (training set)
and tested on 415 molecules (test set)
10-fold CV: ACC=0.72 / AUC=0.77
External: ACC=0.88 / AUC=0.94

No
CYP1A2 inhibitor?

Cytochrome P450 1A2 inhibitor: SVM model built on 9145 molecules (training set)
and tested on 3000 molecules (test set)
10-fold CV: ACC=0.83 / AUC=0.90
External: ACC=0.84 / AUC=0.91

No
CYP2C19 inhibitor?

Cytochrome P450 2C19 inhibitor: SVM model built on 9272 molecules (training set)
and tested on 3000 molecules (test set)
10-fold CV: ACC=0.80 / AUC=0.86
External: ACC=0.80 / AUC=0.87

No
CYP2C9 inhibitor?

Cytochrome P450 2C9 inhibitor: SVM model built on 5940 molecules (training set)
and tested on 2075 molecules (test set)
10-fold CV: ACC=0.78 / AUC=0.85
External: ACC=0.71 / AUC=0.81

No
CYP2D6 inhibitor?

Cytochrome P450 2D6 inhibitor: SVM model built on 3664 molecules (training set)
and tested on 1068 molecules (test set)
10-fold CV: ACC=0.79 / AUC=0.85
External: ACC=0.81 / AUC=0.87

No
CYP3A4 inhibitor?

Cytochrome P450 3A4 inhibitor: SVM model built on 7518 molecules (training set)
and tested on 2579 molecules (test set)
10-fold CV: ACC=0.77 / AUC=0.85
External: ACC=0.78 / AUC=0.86

No
Log Kp (skin permeation)?

Skin permeation: QSPR model implemented from
Potts RO and Guy RH. 1992 Pharm. Res.

-6.67 cm/s

Druglikeness

Lipinski?

Lipinski (Pfizer) filter: implemented from
Lipinski CA. et al. 2001 Adv. Drug Deliv. Rev.
MW ≤ 500
MLOGP ≤ 4.15
N or O ≤ 10
NH or OH ≤ 5

0.0
Ghose?

Ghose filter: implemented from
Ghose AK. et al. 1999 J. Comb. Chem.
160 ≤ MW ≤ 480
-0.4 ≤ WLOGP ≤ 5.6
40 ≤ MR ≤ 130
20 ≤ atoms ≤ 70

None
Veber?

Veber (GSK) filter: implemented from
Veber DF. et al. 2002 J. Med. Chem.
Rotatable bonds ≤ 10
TPSA ≤ 140

0.0
Egan?

Egan (Pharmacia) filter: implemented from
Egan WJ. et al. 2000 J. Med. Chem.
WLOGP ≤ 5.88
TPSA ≤ 131.6

0.0
Muegge?

Muegge (Bayer) filter: implemented from
Muegge I. et al. 2001 J. Med. Chem.
200 ≤ MW ≤ 600
-2 ≤ XLOGP ≤ 5
TPSA ≤ 150
Num. rings ≤ 7
Num. carbon > 4
Num. heteroatoms > 1
Num. rotatable bonds ≤ 15
H-bond acc. ≤ 10
H-bond don. ≤ 5

1.0
Bioavailability Score?

Abbott Bioavailability Score: Probability of F > 10% in rat
implemented from
Martin YC. 2005 J. Med. Chem.

0.56

Medicinal Chemistry

PAINS?

Pan Assay Interference Structures: implemented from
Baell JB. & Holloway GA. 2010 J. Med. Chem.

0.0 alert
Brenk?

Structural Alert: implemented from
Brenk R. et al. 2008 ChemMedChem

0.0 alert: heavy_metal
Leadlikeness?

Leadlikeness: implemented from
Teague SJ. 1999 Angew. Chem. Int. Ed.
250 ≤ MW ≤ 350
XLOGP ≤ 3.5
Num. rotatable bonds ≤ 7

No; 1 violation:MW<1.0
Synthetic accessibility?

Synthetic accessibility score: from 1 (very easy) to 10 (very difficult)
based on 1024 fragmental contributions (FP2) modulated by size and complexity penaties,
trained on 12'782'590 molecules and tested on 40 external molecules (r2 = 0.94)

1.46

Application In Synthesis of [ 17407-55-5 ]

* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.

  • Downstream synthetic route of [ 17407-55-5 ]

[ 17407-55-5 ] Synthesis Path-Downstream   1~6

  • 1
  • [ 17407-55-5 ]
  • [ 13850-91-4 ]
  • (R)-2-(tert-Butoxycarbonyl-methyl-amino)-3-methyl-butyric acid (S)-1-carboxy-2-methyl-propyl ester [ No CAS ]
  • 2
  • [ 1342309-23-2 ]
  • [ 17407-56-6 ]
  • [ 17407-55-5 ]
  • [ 312-84-5 ]
  • [ 56-45-1 ]
  • [ 20312-37-2 ]
  • [ 13748-90-8 ]
  • [ 3060-46-6 ]
  • [ 63-91-2 ]
  • [ 31321-74-1 ]
  • [ 673-06-3 ]
  • 3
  • [ 1342309-24-3 ]
  • [ 17407-56-6 ]
  • [ 17407-55-5 ]
  • [ 312-84-5 ]
  • [ 56-45-1 ]
  • [ 20312-37-2 ]
  • [ 13748-90-8 ]
  • [ 3060-46-6 ]
  • [ 63-91-2 ]
  • [ 31321-74-1 ]
  • [ 673-06-3 ]
  • 4
  • Alloc-Me-Ala [ No CAS ]
  • N-Fmoc-N-methyl-L-threonine [ No CAS ]
  • 2-chlorotrityl chloride polystyrene resin [ No CAS ]
  • [ 17407-55-5 ]
  • [ 68858-20-8 ]
  • [ 35661-39-3 ]
  • (S)-2-((((9H-fluoren-9-yl)methoxy)carbonyl)(methyl)amino)-3-methoxypropanoic acid [ No CAS ]
  • [ 103478-62-2 ]
  • [ 143674-78-6 ]
  • [ 138775-22-1 ]
  • C62H103N10O16Pol [ No CAS ]
  • 5
  • Alloc-Me-Ala [ No CAS ]
  • N-Fmoc-N-methyl-L-threonine [ No CAS ]
  • [ 17407-55-5 ]
  • [ 68858-20-8 ]
  • [ 35661-39-3 ]
  • (S)-2-((((9H-fluoren-9-yl)methoxy)carbonyl)(methyl)amino)-3-methoxypropanoic acid [ No CAS ]
  • [ 103478-62-2 ]
  • [ 143674-78-6 ]
  • [ 138775-22-1 ]
  • C78H116N10O18 [ No CAS ]
  • 6
  • odobromoamide [ No CAS ]
  • [ 72-18-4 ]
  • [ 17407-55-5 ]
  • [ 2480-23-1 ]
  • [ 4125-98-8 ]
  • [ 147-85-3 ]
YieldReaction ConditionsOperation in experiment
With hydrogenchloride; In water; at 105℃; for 12h; Absolute Configurations of Amino Acid Residues in 1.Odobromoamide (1, 1.2 mg) was treated with 5 M HCl (0.5mL) at 105 C for 12 h. The hydrolysate was concentrated todryness and partitioned between H2O and EtOAc. The aqueouslayer was subjected to HPLC [Cosmosil HILIC (4.6 250mm), MeCN/10 mM AcONH4 = 85:15 at 1.0 mL/min, UV detection at 215 nm] to yield N-Me-Ile, N-Me-Val, Hmba, Val andPro. Each amino acid expect for Hmba was added with 0.1%solution of Nα-(5-fluoro-2,4-dinitrophenyl)-L-alaninamide (LFDAA, Marfey’s reagent, 200 L) in acetone and 0.5 MNaHCO3 (100 L) followed by heating at 40 C for 90 min.After cooling to room temperature, the reaction mixture wasneutralized with 2 M HCl (25 L) and diluted with MeOH(300 L). The solution was subjected to reversed-phase HPLC[Cosmosil 5C18-AR-II (4.6 250 mm), MeOH/20 mM AcONa = 60:40 (solvent A) or 50:50 (solvent B) at 1.0 mL/min,UV detection at 340 nm]. The L-FDAA derivatives of standardamino acids were prepared by the same procedure. The retention times (min) of the authentic standards were as follows: LN-Me-Ile (6.6), L-allo-N-Me-Ile (6.9), D-N-Me-Ile (11.6), Dallo-N-Me-Ile (12.2), L-N-Me-Val (5.3) and D-N-Me-Val (8.5)in solvent A, L-Val (6.8), D-Val (18.3), L-Pro (4.9) and D-Pro(6.5) in solvent B. The retention times and ESIMS product ions(m/z [M+Na]+) of the L-FDAA derivatives of N-Me-Ile and NMe-Val from the hydrolysate were 6.6 min (420.1) and 5.3 min(406.1) in solvent A, respectively, proving the configurationsof N-Me-Ile and N-Me-Val were L. The retention times andESIMS product ions (m/z [M+Na]+) of the L-FDAA derivatives of Val and Pro from the hydrolysate were 6.8 min (392.1)and 4.9 min (390.1) in solvent B, respectively, proving theconfigurations of Val and Pro were L
 

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Technical Information

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[ 17407-55-5 ]

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