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Chemical Structure| 13544-06-4 Chemical Structure| 13544-06-4

Structure of 13544-06-4

Chemical Structure| 13544-06-4

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CAS No.: 13544-06-4

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Product Details of [ 13544-06-4 ]

CAS No. :13544-06-4
Formula : C9H5F3N2O2
M.W : 230.14
SMILES Code : [O-][N+](=O)C1=C(CC#N)C=CC(=C1)C(F)(F)F
MDL No. :MFCD00045621
InChI Key :CSRSFUABKGQLSY-UHFFFAOYSA-N
Pubchem ID :2775792

Safety of [ 13544-06-4 ]

GHS Pictogram:
Signal Word:Warning
Hazard Statements:H302-H315-H319-H335
Precautionary Statements:P261-P305+P351+P338

Computational Chemistry of [ 13544-06-4 ] Show Less

Physicochemical Properties

Num. heavy atoms 16
Num. arom. heavy atoms 6
Fraction Csp3 0.22
Num. rotatable bonds 3
Num. H-bond acceptors 6.0
Num. H-bond donors 0.0
Molar Refractivity 49.79
TPSA ?

Topological Polar Surface Area: Calculated from
Ertl P. et al. 2000 J. Med. Chem.

69.61 ?2

Lipophilicity

Log Po/w (iLOGP)?

iLOGP: in-house physics-based method implemented from
Daina A et al. 2014 J. Chem. Inf. Model.

1.36
Log Po/w (XLOGP3)?

XLOGP3: Atomistic and knowledge-based method calculated by
XLOGP program, version 3.2.2, courtesy of CCBG, Shanghai Institute of Organic Chemistry

2.29
Log Po/w (WLOGP)?

WLOGP: Atomistic method implemented from
Wildman SA and Crippen GM. 1999 J. Chem. Inf. Model.

3.83
Log Po/w (MLOGP)?

MLOGP: Topological method implemented from
Moriguchi I. et al. 1992 Chem. Pharm. Bull.
Moriguchi I. et al. 1994 Chem. Pharm. Bull.
Lipinski PA. et al. 2001 Adv. Drug. Deliv. Rev.

2.44
Log Po/w (SILICOS-IT)?

SILICOS-IT: Hybrid fragmental/topological method calculated by
FILTER-IT program, version 1.0.2, courtesy of SILICOS-IT, http://www.silicos-it.com

1.07
Consensus Log Po/w?

Consensus Log Po/w: Average of all five predictions

2.2

Water Solubility

Log S (ESOL):?

ESOL: Topological method implemented from
Delaney JS. 2004 J. Chem. Inf. Model.

-2.79
Solubility 0.374 mg/ml ; 0.00163 mol/l
Class?

Solubility class: Log S scale
Insoluble < -10 < Poorly < -6 < Moderately < -4 < Soluble < -2 Very < 0 < Highly

Soluble
Log S (Ali)?

Ali: Topological method implemented from
Ali J. et al. 2012 J. Chem. Inf. Model.

-3.39
Solubility 0.0939 mg/ml ; 0.000408 mol/l
Class?

Solubility class: Log S scale
Insoluble < -10 < Poorly < -6 < Moderately < -4 < Soluble < -2 Very < 0 < Highly

Soluble
Log S (SILICOS-IT)?

SILICOS-IT: Fragmental method calculated by
FILTER-IT program, version 1.0.2, courtesy of SILICOS-IT, http://www.silicos-it.com

-3.16
Solubility 0.158 mg/ml ; 0.000687 mol/l
Class?

Solubility class: Log S scale
Insoluble < -10 < Poorly < -6 < Moderately < -4 < Soluble < -2 Very < 0 < Highly

Soluble

Pharmacokinetics

GI absorption?

Gatrointestinal absorption: according to the white of the BOILED-Egg

High
BBB permeant?

BBB permeation: according to the yolk of the BOILED-Egg

Yes
P-gp substrate?

P-glycoprotein substrate: SVM model built on 1033 molecules (training set)
and tested on 415 molecules (test set)
10-fold CV: ACC=0.72 / AUC=0.77
External: ACC=0.88 / AUC=0.94

No
CYP1A2 inhibitor?

Cytochrome P450 1A2 inhibitor: SVM model built on 9145 molecules (training set)
and tested on 3000 molecules (test set)
10-fold CV: ACC=0.83 / AUC=0.90
External: ACC=0.84 / AUC=0.91

Yes
CYP2C19 inhibitor?

Cytochrome P450 2C19 inhibitor: SVM model built on 9272 molecules (training set)
and tested on 3000 molecules (test set)
10-fold CV: ACC=0.80 / AUC=0.86
External: ACC=0.80 / AUC=0.87

Yes
CYP2C9 inhibitor?

Cytochrome P450 2C9 inhibitor: SVM model built on 5940 molecules (training set)
and tested on 2075 molecules (test set)
10-fold CV: ACC=0.78 / AUC=0.85
External: ACC=0.71 / AUC=0.81

No
CYP2D6 inhibitor?

Cytochrome P450 2D6 inhibitor: SVM model built on 3664 molecules (training set)
and tested on 1068 molecules (test set)
10-fold CV: ACC=0.79 / AUC=0.85
External: ACC=0.81 / AUC=0.87

No
CYP3A4 inhibitor?

Cytochrome P450 3A4 inhibitor: SVM model built on 7518 molecules (training set)
and tested on 2579 molecules (test set)
10-fold CV: ACC=0.77 / AUC=0.85
External: ACC=0.78 / AUC=0.86

No
Log Kp (skin permeation)?

Skin permeation: QSPR model implemented from
Potts RO and Guy RH. 1992 Pharm. Res.

-6.08 cm/s

Druglikeness

Lipinski?

Lipinski (Pfizer) filter: implemented from
Lipinski CA. et al. 2001 Adv. Drug Deliv. Rev.
MW ≤ 500
MLOGP ≤ 4.15
N or O ≤ 10
NH or OH ≤ 5

0.0
Ghose?

Ghose filter: implemented from
Ghose AK. et al. 1999 J. Comb. Chem.
160 ≤ MW ≤ 480
-0.4 ≤ WLOGP ≤ 5.6
40 ≤ MR ≤ 130
20 ≤ atoms ≤ 70

None
Veber?

Veber (GSK) filter: implemented from
Veber DF. et al. 2002 J. Med. Chem.
Rotatable bonds ≤ 10
TPSA ≤ 140

0.0
Egan?

Egan (Pharmacia) filter: implemented from
Egan WJ. et al. 2000 J. Med. Chem.
WLOGP ≤ 5.88
TPSA ≤ 131.6

0.0
Muegge?

Muegge (Bayer) filter: implemented from
Muegge I. et al. 2001 J. Med. Chem.
200 ≤ MW ≤ 600
-2 ≤ XLOGP ≤ 5
TPSA ≤ 150
Num. rings ≤ 7
Num. carbon > 4
Num. heteroatoms > 1
Num. rotatable bonds ≤ 15
H-bond acc. ≤ 10
H-bond don. ≤ 5

0.0
Bioavailability Score?

Abbott Bioavailability Score: Probability of F > 10% in rat
implemented from
Martin YC. 2005 J. Med. Chem.

0.55

Medicinal Chemistry

PAINS?

Pan Assay Interference Structures: implemented from
Baell JB. & Holloway GA. 2010 J. Med. Chem.

0.0 alert
Brenk?

Structural Alert: implemented from
Brenk R. et al. 2008 ChemMedChem

2.0 alert: heavy_metal
Leadlikeness?

Leadlikeness: implemented from
Teague SJ. 1999 Angew. Chem. Int. Ed.
250 ≤ MW ≤ 350
XLOGP ≤ 3.5
Num. rotatable bonds ≤ 7

No; 1 violation:MW<1.0
Synthetic accessibility?

Synthetic accessibility score: from 1 (very easy) to 10 (very difficult)
based on 1024 fragmental contributions (FP2) modulated by size and complexity penaties,
trained on 12'782'590 molecules and tested on 40 external molecules (r2 = 0.94)

2.05

Application In Synthesis of [ 13544-06-4 ]

* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.

  • Downstream synthetic route of [ 13544-06-4 ]

[ 13544-06-4 ] Synthesis Path-Downstream   1~22

  • 2
  • [ 61540-35-0 ]
  • [ 98-46-4 ]
  • [ 13544-06-4 ]
  • [ 105003-99-4 ]
  • 3
  • [ 98-46-4 ]
  • [ 3598-14-9 ]
  • [ 13544-06-4 ]
  • [ 105003-99-4 ]
  • 4
  • [ 98-46-4 ]
  • [ 107-14-2 ]
  • [ 13544-06-4 ]
  • [ 105003-99-4 ]
  • 5
  • [ 13544-06-4 ]
  • [2-amino-4-(trifluoromethyl)phenyl]acetonitrile [ No CAS ]
  • [2-(hydroxyamino)-4-(trifluoromethyl)phenyl]acetonitrile [ No CAS ]
  • 6
  • [ 13544-06-4 ]
  • [ 336608-68-5 ]
  • 7
  • [ 13544-06-4 ]
  • [ 336608-66-3 ]
  • 8
  • [ 13544-06-4 ]
  • [ 336608-71-0 ]
  • 9
  • [ 13544-06-4 ]
  • [ 336608-69-6 ]
  • 10
  • [ 13544-06-4 ]
  • 1-(<i>tert</i>-butyl-dimethyl-silanyl)-6-trifluoromethyl-1<i>H</i>-indole-3-carboxylic acid [ No CAS ]
  • 11
  • [ 13544-06-4 ]
  • [ 336608-70-9 ]
  • 12
  • [ 13544-06-4 ]
  • 1-(3-<i>p</i>-tolyl-ureido)-6-trifluoromethyl-1<i>H</i>-indole-3-carboxylic acid ethyl ester [ No CAS ]
  • 13
  • [ 13544-06-4 ]
  • 1-[3-(4-chloro-phenyl)-ureido]-6-trifluoromethyl-1<i>H</i>-indole-3-carboxylic acid ethyl ester [ No CAS ]
  • 14
  • [ 13544-06-4 ]
  • 1-[3-(2-fluoro-phenyl)-ureido]-6-trifluoromethyl-1<i>H</i>-indole-3-carboxylic acid ethyl ester [ No CAS ]
  • 15
  • [ 13544-06-4 ]
  • Ethyl 1-((((4-(methylthio)phenyl)amino)carbonyl)amino)-6-(trifluoromethyl)-1H-indole-3-carboxylate [ No CAS ]
  • 17
  • [ 98-56-6 ]
  • [ 13544-06-4 ]
  • 18
  • [ 13544-06-4 ]
  • [ 771579-57-8 ]
YieldReaction ConditionsOperation in experiment
77% 1.75 g (7.6 mmol) (2-Nitro-4-trifluoromethylphenyl)-acetonitrile in 20 ml THF are cooled to 0C in a nitrogen atmosphere and treated with 60 mi BH3/THF- complex (1 M in THF). The reaction mixture is allowed to slowly warm up to room temperature overnight. After 72 h the reaction solution is slowly given to 50 ml 5 N HO gegeben and then 1 h heated to reflux. The reaction mixture is evaporated to dryness, the residue made alkaline (pH 12-14) with 25% NaOH solution and extracted 2x with 100 mi ethylacetate. The combined organic phases are washed with brine, dried using Na2SO4, filtered and evaporated. Yield : 1.8 g (77 %) 112, brown oil
  • 19
  • [ 13544-06-4 ]
  • [ 74-88-4 ]
  • [ 870220-99-8 ]
YieldReaction ConditionsOperation in experiment
With 18-crown-6 ether; potassium tert-butylate; In tetrahydrofuran; at -78 - 70℃; for 4.83333h; Step 1. Preparation of 2-Methyl-2-(2-nitro-4- trifluoromethyl-phenyl) -propionitrile; The title compound was synthesized according to a method described in Prasad, G. , J. Org. Chem. 1991,56, 7188-7190. To a yellow-brown solution of (2-Nitro-4-trifluoromethyl- phenyl) -acetonitrile (2.5 g, 11 mmol), 18-crown-6 (0.72 g, 2.7 mmol), and methyl iodide (1.5 mL, 24 mmol) in dry THF under nitrogen at-78 degrees C was added potassium tert- butoxide (2.7 g, 24 mmol) in one portion. The reaction immediately became a deep purple color. The reaction was allowed to stir for 2 h at-78 degrees C, and was then warmed to ambient temperature. A water-cooled reflux condenser was added and the solution heated to 70 degrees C under nitrogen. Over 40 minutes, the color changed from dark purple to cloudy gray. The mixture was allowed to cool to room temperature, and was concentrated in vacuo. The resulting material was partitioned between 1 N HCI and EtOAc. The organic layer was washed once with brine, dried over sodium sulfate, filtered, and concentrated in vacuo to give a brown oil which was judged to be primarily monoalkylated nitrile. The crude material was resubjected to the reaction conditions using 18-crown-6 (0.72 mg, 2.7 mmol), methyl iodide (0.75 mL, 12 mmol), and potassium tert- butoxide (1.4 g, 12 mmol) as before, with the following modifications: the reaction was allowed to stir only 10 min. at-78 degrees C before being warmed to room temperature, and the reaction vessel was sealed and heated to 70 degrees C for 2 h. Upon cooling to room temperature, the reaction was quenched and worked up as before. Purification by flash chromatography afforded the desired product as a light brown solid. MS (M+H) + = 259; Calc'd 258.20 for C11H9F3N2O2.
  • 20
  • [ 13544-06-4 ]
  • [ 922711-85-1 ]
YieldReaction ConditionsOperation in experiment
A solution containing <strong>[13544-06-4][2-nitro-4-(trifluoromethyl)phenyl]acetonitrile</strong> (0.206 g), sodium azide (0.064 g), zinc bromide (0.203 g), water (1.8 ml_), and isopropanol (0.18 mL) was brought to reflux for 48 hours. After cooling to room temperature, the mixture was diluted with ether (3 mL), and the layers were separated. The aqueous layer was diluted with 2N HCI and reextracted with ethyl acetate. The ethyl acetate layer was dried over Na2SO4, filtered, and concentrated to provide the title product (0.17 g). HPLC Rt = 2.4 minutes; m/z [MH]+ = 274
  • 21
  • [ 67-56-1 ]
  • [ 13544-06-4 ]
  • [ 922711-80-6 ]
YieldReaction ConditionsOperation in experiment
With acetyl chloride; at 0℃; To a sealable tube containing methanol (10 ml_) at 0 0C was added acetyl chloride (12 ml_) dropwise. [2-Nitro-4-(trifluoromethyl)phenyl]acetonitrile was then added. The tube was sealed and allowed to stand at 0 0C overnight. The resulting precipitate was filtered, washed with ether, and dried to provide the title product (5.3 g). HPLC Rt = 2.8 minutes
  • 22
  • [ 13544-06-4 ]
  • [ 107-13-1 ]
  • 7-(trifluoromethyl)-4-cyanoquinoline N-oxide [ No CAS ]
YieldReaction ConditionsOperation in experiment
96% General procedure: 2-Nitrophenylacetonitrile1 (1 mmol) in tetrahydrofuran (3 mL)was added with stirring to sodium hydride (0.042g, 1.05 mmol, 60% suspension inoil) in tetrahydrofuran (20 mL). The reaction mixture turned deep purple andwas stirred for 6 min . Then acrylonitrile (0.11 g, 2 mmol) in tetrahydrofuran(1 mL) was added during 2 min. The reaction mixture was stirred for 25 min atroom temperature and then dissolved in ethyl acetate (50 mL) and poured intosaturated aqueous NH4Cl (25 mL). The aqueous phase was extractedwith ethyl acetate (2x20 mL). Combined extract was washed with brine and driedwith Na2SO4. After evaporation of the solvent the crudeproduct was subjected to column chromatography on SiO2 with hexane-ethylacetate 2:1 then gradually changed to pure ethyl acetate
 

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