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Wen Ren ; Yuling Deng ; Jacob D. Ward , et al. Eur. J. Med. Chem.,2024,263,115794. DOI: 10.1016/j.ejmech.2023.115794
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Abstract: The synthesis and evaluation of small-molecule inhibitors of tubulin polymerization remains a promising approach for the development of new therapeutic agents for cancer treatment. The natural products colchicine and combretastatin A-4 (CA4) inspired significant drug discovery campaigns targeting the colchicine site located on the beta-subunit of the tubulin heterodimer, but so far these efforts have not yielded an approved drug for cancer treatment in human patients. Interest in the colchicine site was enhanced by the discovery that a subset of colchicine site agents demonstrated dual functionality as both potent antiproliferative agents and effective vascular disrupting agents (VDAs). Our previous studies led to the discovery and development of a 2-aryl-3-aroyl-indole analogue (OXi8006) that inhibited tubulin polymerization and demonstrated low nM IC50 values against a variety of human cancer cell lines. A water-soluble phosphate prodrug salt (OXi8007), synthesized from OXi8006, displayed promising vascular disrupting activity in mouse models of cancer. To further extend structure-activity relationship correlations, a series of 6-aryl-3-aroyl-indole analogues was synthesized and evaluated for their inhibition of tubulin polymerization and cytotoxicity against human cancer cell lines. Several structurally diverse molecules in this small library were strong inhibitors of tubulin polymerization and of MCF-7 and MDA-MB-231 human breast cancer cells. One of the most promising analogues (KGP591) caused significant G2/M arrest of MDA-MB-231 cells, disrupted microtubule structure and cell morphology in MDA-MB-231 cells, and demonstrated significant inhibition of MDA-MB-231 cell migration in a wound healing (scratch) assay. A phosphate prodrug salt, KGP618, synthesized from its parent phenolic precursor, KGP591, demonstrated significant reduction in bioluminescence signal when evaluated in vivo against an orthotopic model of kidney cancer (RENCA-luc) in BALB/c mice, indicative of VDA efficacy. The most active compounds from this series offer promise as anticancer therapeutic agents.
Keywords: Inhibitors of tubulin polymerization ; Vascular disrupting agents ; Indole synthesis ; Molecular docking ; Antiproliferative agents ; Inhibitors of cell migration
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CAS No. : | 13331-27-6 | MDL No. : | MFCD00007193 |
Formula : | C6H6BNO4 | Boiling Point : | No data available |
Linear Structure Formula : | O2N(C6H4)B(OH)2 | InChI Key : | ZNRGSYUVFVNSAW-UHFFFAOYSA-N |
M.W : | 166.93 | Pubchem ID : | 1677 |
Synonyms : |
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Signal Word: | Warning | Class: | |
Precautionary Statements: | P261-P305+P351+P338 | UN#: | |
Hazard Statements: | H315-H319-H335 | Packing Group: | |
GHS Pictogram: |
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* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
26% | With tetrakis(triphenylphosphine) palladium(0); sodium carbonate; In water; toluene; at 20 - 80℃; for 5h;Inert atmosphere; | [000408] Synthesis of methyl 3’-nitro-[l, 1’-biphenylj-3-carboxylate (515): To a stirred solution of <strong>[618-89-3]methyl 3-bromobenzoate</strong> 514 (2.5 g, 14.99 mmol) and (3-nitrophenyl) boronic acid 382 (3.8 g, 17.99 mmol) in toluene (20 mL) under inert atmosphere were added sodium carbonate (3.17 g, 29.99 mmol in 20 mL of H20) at RT and purged under argon atmosphere for 20 mm. To this was added Pd(PPh3)4 (693 mg, 0.59 mmol) and heated to 80 C for 5 h. The reaction was monitored by TLC; after completion of the reaction, the reaction mixture was diluted with EtOAc (200 mL). The organic extract was dried over sodium sulfate, filtered and concentrated in vacuo to obtain the crude. The crude was purified through silica gel column chromatography using 10% EtOAc/ hexanes to afford compound 515 (1 g, 26%) as yellow liquid. TLC: 15% EtOAc/ hexanes (R 0.5); 1H NMR (400 MHz, DMSO-d6): ? 8.48-8.46 (m, 1H), 8.30-8.25 (m, 2H), 8.22-8.18 (m, 1H), 8.11-8.07 (m, 1H), 8.04 (dt,J 7.8, 1.3 Hz, 1H),7.80 (t, J= 8.0 Hz, 1H), 7.69 (t, J= 7.8 Hz, 1H), 3.91 (s, 3H). |
With palladium 10% on activated carbon; sodium carbonate; In methanol;Reflux; | [0089] A mixture of (3-nitrophenyl)boronic acid and <strong>[618-89-3]methyl 3-bromobenzoate</strong> was placed into a reaction vessel with 10% palladium on carbon (Pd/C) and sodium carbonate (Na2C03) in methanol (MeOH). The reaction mixture was held at reflux until the starting materials had been converted into methyl 3'-nitro-[l1,1]-biphenyl]-3-carboxylate. The methyl 3'-nitro-[1,1]biphenyl]-3-carboxylate was maintained in the reaction vessel, used without purification, isopropyl acetate was added to the reaction vessel and the mixture subsequently reacted with 10% Pd/C in a hydrogen atmosphere to yield methyl 3'-amino-[1,1]-biphenyl]- 3-carboxylate. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
95% | With potassium carbonate; In ethanol; water; at 80℃; for 0.75h; | General procedure: General procedure: Aryl halide (1.0 mmol), arylboronic acid (1.2 mmol), base (2.5 mmol), and Fe3O4/SiO2-Met-Pd(OAc)2 (10 mg, 0.14 mol% Pd) were added to the vessel (10 mL) with 3 mL of solvent. The mixture was continuously stirred at 80 C in an air atmosphere for the desired time until complete consumption of the starting aryl halide as monitored by TLC. After magnetic separation of the catalyst, the product was extracted with diethyl ether and purified by column chromatography (n-hexane: chloroform). In the recycling experiment, the separated catalyst was then washed with ether and dried under vacuum to remove residual solvent |
94% | With potassium carbonate; In ethanol; water; at 80℃; for 2h; | Suzuki-Miyaura coupling reaction;In a typical reaction, to a solution of 1 mmol of the aryl halide in 5 ml of water/ethanol (1:1) was added 1.1 mmol of phenyl boronic acid, 276 mg of K2CO3 (2 mmol) followed by 15 mg of the solid catalyst (1 mol%). The mixture was then stirred for the desired time at 80 C. The reaction was monitored by thin layer chromatography (TLC). After completion of reaction, the reaction mixture was cooled to room temperature and the catalyst (SBA-15/Met/Pd(II)) was recovered by centrifuge and washed with ethyl acetate and ethanol.The combined organic layer was dried over anhydrous sodium sulfate and evaporated in a rotary evaporator under reduced pressure. The crude product was purified by column chromatography. |
93% | With palladium diacetate; metformin hydrochloride; potassium carbonate; In ethanol; water; at 80℃; for 2h;Green chemistry; | General procedure: To a 5 mL flask containing a mixture of Pd(OAc)2 (0.01 mmol, 0.025 g), Met.HCl (0.02 mmol, 0.033 mg), and K2CO3 (2 mmol, 276 mg) in distilled H2O (1.5 mL) and EtOH (99%, 1.5 ml) were added aryl halide (1 mmol) and boronic acid (1.1 mmol) at 80 C, and the mixture stirred for the appropriate amount of time (see Table 2). The progress of the reaction was monitored by TLC. After completion of the reaction, the mixture was washed with EtOAc (5Χ1ml) and the organic phase separated and evaporated. Further purification was by column chromatography (EtOAc/n-hexane) gave the desired coupled product. |
93% | With Pd/C; potassium carbonate; In water; N,N-dimethyl-formamide; at 110℃; for 2.5h; | General procedure: To a tube equipped with a magnetic stir bar were added catalyst 1(7.0 mg, 0.1 mol% Pd), K2CO3 (138 mg, 2.0 equiv), arylboronicacid (1.1 equiv), and aryl bromide (0.5 mmol) in turn. Subsequently,the solvent (DMF-H2O, 3:2, 2.0 mL, v/v) was added under an airatmosphere. The reaction was then heated to 40 C and stirred untilthe aryl bromide was completely consumed as determined by TLC.After completion of the reaction, the reaction mixture was purifiedby silica gel column chromatography to afford the desired pureproduct. |
90% | With potassium carbonate; In water; at 50℃; for 3h; | General procedure: In a test tube equipped with a magnetic stirrer bar, thearyl halide 1 (1 mmol) was mixed with phenyl boricacid 2 (1.2 mmol), K2CO3(2 mmol), and the Pd-catalyst(0.1mol% Pd) in 2 ml of H2Oin air. The reaction mixturewas then stirred at 50 C for appropriate time. After completionof the reaction, the catalyst was removed by magnetand washed with ethanol and water (3 × 5 ml). The aqueouslayer was extracted with chloroform, then organic layerdried over anhydrous MgSO4.The solvent was evaporatedunder reduced pressure to give the corresponding biarylcompounds. All the products were previously reported [5,8-12] and were confirmed by the spectroscopic methodusing 1H and 13C NMR (see supporting information). |
87% | With 0.1 % Cu/C; potassium carbonate; In water; at 50℃; for 4h;Green chemistry; | General procedure: In a test tube, 1.0 mmol of aryl halides 1, 1.2 mmol of phenylboronic acid 2 were mixed together and then 2.0 mmol of K2CO3, and the Cu/Cnano-catalyst (0.1 mol % Cu) in 2 mL of H2O, were added in air. The reaction mixture was then stirred at 50 C for appropriate time. After completion of the reaction (monitored by TLC), the catalyst was removed by simple filtration. The recycled catalyst was was hed with ethanol and water (3 × 5 mL) and dried at 60 C in oven for further use. The aqueous layer was extracted with ethyl acetate, and organic layer dried over anhydrous MgSO4. The solvent was evaporated under reduced pressure to give the corresponding biaryl compounds. |
71% | With tetrabutylammomium bromide; potassium carbonate; In water; at 90℃; for 4h;Green chemistry; | General procedure: 25-ml RB was charged with 4-iodo anisole (1.0 mmol), phenyl boronic acid (1.5 mmol), GO-PMMA-Pd catalyst (0.3 mol %), K2CO3 (1 mmol), TBAB (10 mol %) and 2 ml water. The mixture was allowed to stir at 90 C for an appropriate time (Table 1) and the extent of the reaction was monitored by thin layer chromatography (TLC). After the completion of the reaction, the reaction mixture was extracted by ethyl acetate (2×25 mL) and washed with water repeatedly. The catalyst was filtered off and washed several times with ether and water (1:1) until no significant product was obtained in the wash. The recoverd catalyst was reused for the next coupling experiment. The reaction mixture was dried over anhydrous Na2SO4, concentrated in vacuum and purified by column chromatography on silica gel 60-120 mesh using petroleum ether as eluent to obtain pure product. The catalyst recoverd after 5th run was subjected to ICP-AES for Pd content analysis. The isolated products were analysed by 1H NMR and 13C NMR spectroscopy. |
53% | With Pd(memantine)2Cl2; sodium hydroxide; In ethanol; at 80℃; for 24h; | General procedure: In the reaction tube with a magnetic bar was added the solution of aryl bromides (0.5 mmol) and phenylboronic acid (91 mg, 0.75 mmol), NaOH (24 mg, 0.6 mmol), complex 1 (0.0001-0.02 mol%, dissolved in DMA) and ethanol (3 mL). After stirred for the required time in the preset conditions, the reaction mixture was cooled to room temperature, and then quenched by 1 mL brine and 3 mL water, and extracted with ethyl acetate (3×5 mL). The combined organic layer was dried over anhydrous MgSO4 and the filtrate was concentrated to dryness under reduced pressure. The crude products were purified by column chromatography (petroleum ether, ethyl acetate) on silica gel. |
With C24H20Cl2NPPdS; potassium carbonate; palladium; In toluene; at 100℃; for 24h; | General procedure: A 100 ml round bottom flask was fitted with a reflux condenser and a magnetic stirrer bar. The flask was charged with toluene (15 ml) and the appropriate amount of catalyst reagents and the internal standard (n-Decane: 2.59 mmol). The contents were thoroughly mixed and an initial sample (t0) was then taken. The reaction flask was placed in an oil bath at the desired temperature and the reaction mixture allowed to heat/reflux with stirring. A sample was taken and analyzed every 10 min for the first hour and every 30 min thereafter until t3h. In cases where conversionwas not complete after 3 h, the reaction mixturewas then allowed to stir for a total of 24 h. The reaction at 140 C was performed in a sealed tube. All catalytic reactions were done under aerobic conditions. Percentage conversions were determined by GC with n-decane as the internal standard and the coupling products were characterized by mass spectrometry (Table 4) as well as 1H NMR spectroscopy (Entry 5, Table 4 only). | |
With C31H33Cl2N2PPd; potassium hydroxide; In decane; N,N-dimethyl-formamide; at 150℃; for 3h;Catalytic behavior; | General procedure: The Suzuki-Miyaura cross-coupling reactions were performed in acarousel using 24 × 150 mm quick-thread glass reaction tubes. Thegeneral procedure is similar to that given for the Mizoro-Heck Crosscouplingreactions, however, boronic acid is used herein instead of analkene. The GC was initially calibrated using standard samples ofboronic acid, toluene, n-decane and the aryl halide in order to accuratelydetermine the retention times of these compounds. Also, the reactionmixture in the reaction vessel was sampled to determine time zerovalues and analysed by GC to determine the ratios of the various components.The required catalyst amount (mol %) was then added and thereaction proceeded with a stirring rate of 600 rpm. Upon the elapse ofthe reaction time, the aryl halide conversion to biphenyl was calculatedby analysing the retention peak areas of the aryl halide with reference ton-decane as an internal standard. The NMR data of the isolated productsare given in the Supplementary Information (SI2). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
39% | With sodium carbonate;tetrakis(triphenylphosphine) palladium(0); In ethanol; water; toluene; at 90℃; for 24h; | A solution of 2,3-dichloro-iodobenzene (6.00 G, 22. 0 mmol) in 60 mL toluene and 20 mL eth- anol was treated with 3-nitro-phenylboron. ic acid (4. 22 G, 25. 3 mmol) and NA2CO3 (2 N in H20, 30. 0 ML). Then mixture was purged with N2 for 5 min and Pd- (PPH3) (1. 02 G, 0. 879 mmol) was added. The mixture was heated to 90°C for 24 h and cooled to ambient temperature and concentrated in vacuo. The residual oil was partitioned with Et2O (80 M. L) and washed with dilute brine solution (3x50 mL), dried (Na2SO4), filtered, and concentrated under reduced pressure. The resulting white solid was recrystallized from hexane and to give the title compound (2.30 g, 39percent) as a fluffy white SOLID. 1H NMR (CDC13,400 MHz) 5 8.29 (m, 2H), 7.76 (m, 1H), 7.63 (t, J=7. 61 Hz, 1H), 7. 55 (m, 1H), 7. 31 (t, J=7.81 HZ, 1H), 7.26 (m, 1H.) |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
32.5% | With tetrabutylammomium bromide; palladium diacetate; potassium carbonate; In water; at 70℃; for 3.33h;Inert atmosphere; | General procedure: Mixtures of the aryl bromides 24 or 30 (2.65mmol), the boronic acids 23a or 23b (2.23mmol), tetrabutylammonium bromide (796mg, 2.47mmol), and K2CO3 (2.9g, 21mmol) were suspended in distilled water (10mL) under argon for 20min. Then Pd(OAc)2 (9.2mg, 0.04mmol) was added, and the resulting suspensions were heated to 70C and stirred under argon for 3h. After cooling down, the solutions were diluted with distilled water (10mL) and extracted with CH2Cl2 (3×15mL). The combined organic layers were dried over Na2SO4 and the solvents were evaporated. The crude residues were further purified by silica gel column chromatography, eluting with hexane-ethyl acetate 8:2, to provide the products 25a-b or 25d. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
57% | With tetrakis(triphenylphosphine) palladium(0); potassium carbonate; In tetrahydrofuran; water; at 155℃; for 0.333333h; | General procedure: To a mixture of compound 7a (1 mmol), the corresponding (het)arylboronic acid 8 (1.2 mmol), Pd(PPh3)4 (58 mg, 0.05 mmol) in degassed THF (3 mL), a solution of K2CO3 (346 mg, 2.5 mL) in water (4 mL) were added. The reaction mixture was microwave irradiated at 155 C (250 W) for 20 min, then solvent was removed in vacuo. Products were isolated by column chromatography (elution with ethyl acetate-hexane, 1 : 2). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
97% | With dichloro(pentamethylcyclopentadienyl)rhodium (III) dimer; silver trifluoroacetate; In methanol; at 60℃;Schlenk technique; Inert atmosphere; | General procedure: A mixture of N-pyrimidyl indoles 1 (0.20 mmol, 1.0 equiv.), arylboronicacids 2 (0.40 mmol, 2.0 equiv.),AgOOCF3 (0.80 mmol, 4.0 equiv.), and [RhCp*Cl2]2(0.002 mmol, 0.01 equiv.) were combined in MeOH (1.0 mL) in a dried Schlenk tubeunder a argon atmosphere. The resulting mixture was stirred at 60 C andmonitored by TLC. Uponcompletion or no further improvement of reaction, the reaction mixture wascooled to room temperature and added with Et3N (1 mL). Then themixture was filtered through a pad of silica gel eluting with 25 mL of CH2Cl2.The solvent was removed under reduced pressure and the residue was purified byflash chromatography on silica gel to afford the desired products. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
60% | With bis-triphenylphosphine-palladium(II) chloride; sodium carbonate; In 1,2-dimethoxyethane; water; at 90℃; | A solution of ethyl 5-bromo-l-methylpyrazole-4-carboxylate (1.0 g, 4.29 mmol), 3- nitrophenylboronic acid (859 mg, 5.15 mmol), sodium carbonate (909 mg, 8.58 mmol dissolved in 4.3 mL water), and bis(triphenylphosphine)palladium(II) dichloride (151 mg, 0.21 mmol) in DME (43 mL) was heated to 90 C overnight. After this time, General Work-up Procedure 1 was followed, and the crude residue was purified by Chromatography A to afford the title compound (710 mg, 60 % yield). |
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