Structure of 126937-43-7
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CAS No. : | 126937-43-7 |
Formula : | C14H18N2O4 |
M.W : | 278.30 |
SMILES Code : | O=C(N1C(C(OC)=O)CNCC1)OCC2=CC=CC=C2 |
MDL No. : | MFCD04115344 |
InChI Key : | HOLPEQRNMJTIIX-UHFFFAOYSA-N |
Pubchem ID : | 14751355 |
GHS Pictogram: |
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Signal Word: | Warning |
Hazard Statements: | H302-H315-H319-H335 |
Precautionary Statements: | P261-P305+P351+P338 |
Num. heavy atoms | 20 |
Num. arom. heavy atoms | 6 |
Fraction Csp3 | 0.43 |
Num. rotatable bonds | 6 |
Num. H-bond acceptors | 5.0 |
Num. H-bond donors | 1.0 |
Molar Refractivity | 79.43 |
TPSA ? Topological Polar Surface Area: Calculated from |
67.87 ?2 |
Log Po/w (iLOGP)? iLOGP: in-house physics-based method implemented from |
2.77 |
Log Po/w (XLOGP3)? XLOGP3: Atomistic and knowledge-based method calculated by |
0.92 |
Log Po/w (WLOGP)? WLOGP: Atomistic method implemented from |
-0.14 |
Log Po/w (MLOGP)? MLOGP: Topological method implemented from |
0.76 |
Log Po/w (SILICOS-IT)? SILICOS-IT: Hybrid fragmental/topological method calculated by |
0.86 |
Consensus Log Po/w? Consensus Log Po/w: Average of all five predictions |
1.03 |
Log S (ESOL):? ESOL: Topological method implemented from |
-1.97 |
Solubility | 2.97 mg/ml ; 0.0107 mol/l |
Class? Solubility class: Log S scale |
Very soluble |
Log S (Ali)? Ali: Topological method implemented from |
-1.93 |
Solubility | 3.26 mg/ml ; 0.0117 mol/l |
Class? Solubility class: Log S scale |
Very soluble |
Log S (SILICOS-IT)? SILICOS-IT: Fragmental method calculated by |
-2.83 |
Solubility | 0.41 mg/ml ; 0.00147 mol/l |
Class? Solubility class: Log S scale |
Soluble |
GI absorption? Gatrointestinal absorption: according to the white of the BOILED-Egg |
High |
BBB permeant? BBB permeation: according to the yolk of the BOILED-Egg |
No |
P-gp substrate? P-glycoprotein substrate: SVM model built on 1033 molecules (training set) |
No |
CYP1A2 inhibitor? Cytochrome P450 1A2 inhibitor: SVM model built on 9145 molecules (training set) |
No |
CYP2C19 inhibitor? Cytochrome P450 2C19 inhibitor: SVM model built on 9272 molecules (training set) |
No |
CYP2C9 inhibitor? Cytochrome P450 2C9 inhibitor: SVM model built on 5940 molecules (training set) |
No |
CYP2D6 inhibitor? Cytochrome P450 2D6 inhibitor: SVM model built on 3664 molecules (training set) |
No |
CYP3A4 inhibitor? Cytochrome P450 3A4 inhibitor: SVM model built on 7518 molecules (training set) |
No |
Log Kp (skin permeation)? Skin permeation: QSPR model implemented from |
-7.34 cm/s |
Lipinski? Lipinski (Pfizer) filter: implemented from |
0.0 |
Ghose? Ghose filter: implemented from |
None |
Veber? Veber (GSK) filter: implemented from |
0.0 |
Egan? Egan (Pharmacia) filter: implemented from |
0.0 |
Muegge? Muegge (Bayer) filter: implemented from |
0.0 |
Bioavailability Score? Abbott Bioavailability Score: Probability of F > 10% in rat |
0.55 |
PAINS? Pan Assay Interference Structures: implemented from |
0.0 alert |
Brenk? Structural Alert: implemented from |
1.0 alert: heavy_metal |
Leadlikeness? Leadlikeness: implemented from |
No; 1 violation:MW<0.0 |
Synthetic accessibility? Synthetic accessibility score: from 1 (very easy) to 10 (very difficult) |
3.01 |
* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
Intermediate 21 : 2-Methyl-1-(phenylmethyl) 1,2-piperazinedicarboxylate. 2-Methyl 1-(phenylmethyl) 1 ,2-piperazinedicarboxylate was prepared from the corresponding TFA salt (whose preparation is already known in literature eg. in Journal of Medicinal Chemistry (1990), 33(10), 2916-24 or Tetrahedron Letters (1989), 30(39), 5193-6.) To a DCM solution (5ml) of (4-(1,1 -dimethylethyl) 2-methyl 1-(phenylmethyl) 1 ,2,4-piperazinetricarboxylate (500mg) was added, at 00C, TFA (3ml) and the reaction temperature allowed to slowly reach 200C. After complete conversion of the starting material DCM was evaporated, the crude was dissolved in water and extracted with Et2O; then the water phase was basified (pH>9) with solid NaOH and extracted with DCM, the organic layer dried over Na2SO4 and the solvent evaporated to give a colourless oil (92 mg);UPLC RT=0.47; m/z (ES): 279.1 [M+H]+; H NMR (400 MHz, CHLOROFORM-d) δ ppm 7.29 - 7.45 (m, 5 H) 5.09 - 5.25 (m, 2 H) 4.60 - 4.83 (m, 2 H) 3.85 - 4.05 (m, 1 H) 3.69 - 3.84 (m, 3 H) 3.44 - 3.63 (m, 1 H) 2.87 - 3.33 (m, 3 H) 2.65 - 2.84 (m, 1 H). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
Intermediate 38: 2-Methyl 1-(phenylmethyl) 4-(5',11 '-dihydrospiro[cvclopentane-1 ,10'- dibenzo[a,d]cvclohepten]-3-yl)-1,2-piperazinedicarboxylate. To a solution of (+) 5',11 '-dihydro-3H-spiro[cyclopentane-1 ,10'-dibenzo[a,d]cyclohepten]- 3-one (Intermediate 7, 60 mg, 0.229 mmol) and 2-methyl 1-(phenylmethyl) 1 ,2- piperazinedicarboxylate (Intermediate 21 , 76 mg, 0.274 mmol) in DCE (4 ml) under nitrogen was added AcOH (0.026 ml, 0.457 mmol). The reaction was stirred at room temperature for 1 h and then NaBH(OAc)3 (72.7 mg, 0.343 mmol) was added and the resulting mixture was stirred overnight. The mixture was diluted with DCM. Organic phase was washed with NaHCOβ sat. sol., brine and concentrated under vacuum. The crude mixture was purified through SiO2 (redisep Catridge 12 g) using cyclohexane: EtOAc (From 100 : 00 to 80 : 20 for 25 min and 80 : 20 for 40 min) to afford title compound (106 mg, 0.202 mmol) as a mixture of two diastereoisomeric racemates.For the major diastereoisomer: 1H NMR (400 MHz, CHLOROFORM-c/) d ppm 7.43-6.98 (m, 8 H); 5.26-5.13 (m, 2 H); 4.61-4.88 (m, 1 H); 4.24-4.01 (m, 2 H); 3.84-3.62 (m, 3 H); 3.48-2.74 (m, 7 H); 2.32-1.75 (m, 10 H); 1.45 (s, 3 H). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
420 mg | With (2-dicyclohexylphosphino-2’,4’,6’-triisopropyl-1,1 ‘-biphenyl)[2-(2’-amino-1,1‘-biphenyl)]palladium(II) methanesulfonate; caesium carbonate; In 1,4-dioxane; at 100℃; for 12.0h;Inert atmosphere; | To a solution of ferf-butyl 5-bromoisoindoline-2-carboxylate (compound 15a, 1.12 g, 3.75 mmol) in l,4-dioxane (10 mL) was added Ol-benzyl 02-methyl piperazine- l,2-dicarboxylate (CAS: 126937-43-7, Vendor: BePharm, 950 mg, 3.41 mmol), CS2CO3 (1.67 g, 5.12 mmol) and XPhos Pd G3 (289 mg, 0.34 mmol). The mixture was stirred at 100 C under N2 for 12 hrs. After being cooled down, the mixture was filtered and concentrated. The residue was diluted with EtOAc (10 mL) and washed with water (3 mL) and brine (3 mL), dried over anhydrous Na2S04, concentrated to give a cmde product which was purified by flash column (PE/EtOAc = 3/1) to give compound 15b (420 mg) as a yellow oil. MS: calc’d 496 (MH+), measured 496 (MH+). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
40% | With pyridine; oxygen; In dichloromethane; at 20℃; for 48.0h;Molecular sieve; | A mixture of <strong>[126937-43-7]1-benzyl 2-methyl piperazine-1,2-dicarboxylate</strong> (2 g, 7.19 mmol), (4-(benzyloxy)phenyl)boronic acid (3.3 g, 14.37 mmol) and copper (II) acetate (1.30 g, 7.19 mmol) in dichloromethane (60 mL) was added pyridine (1.2 mL, 14.37 mmol) and 2 g of 4A molecular sieves. The reaction mixture was stirred at room temperature for 48 h under oxygen atmosphere. The resulting suspension was filtered through Celite pad, washed with 50 mL of dichloromethane and filtrate was evaporated under reduced pressure to give the crude residue. The crude residue was purified by flash chromatography (0 - 10% EtOAc in pet ether) to afford 1-benzyl 2-methyl 4-(4- (benzyloxy)phenyl)piperazine-1,2-dicarboxylate (2.2 g, 8.90 mmol, 40% yield) as off- white solid. LC-MS, [M+H]+= 461.1, (Method F, tR= 3.37 min).1H NMR (300MHz, CDCl3): δ ppm 7.48 - 7.29 (m, 10H), 6.97 - 6.84 (m, 4H), 5.27 - 5.16 (m, 2H), 5.07 - 5.00 (m, 2H), 4.96 - 4.77 (m, 1H), 4.16 - 3.93 (m, 2H), 3.77 (s, 3H), 3.51 - 3.23 (m, 2H), 2.93 - 2.65 (m, 2H). (Mixture of rotamers). |
40% | With pyridine; oxygen; In dichloromethane; at 20℃; for 48.0h;Molecular sieve; | A mixture of <strong>[126937-43-7]1-benzyl 2-methyl piperazine-1,2-dicarboxylate</strong> (2 g, 7.19 mmol), (4-(benzyloxy)phenyl)boronic acid (3.3 g, 14.37 mmol) and copper (II) acetate (1.30 g, 7.19 mmol) in dichloromethane (60 mL) was added pyridine (1.2 mL, 14.37 mmol) and 2 g of 4A molecular sieves. The reaction mixture was stirred at room temperature for 48 h under oxygen atmosphere. The resulting suspension was filtered through Celite pad, washed with 50 mL of dichloromethane and filtrate was evaporated under reduced pressure to give the crude residue. The crude residue was purified by flash chromatography (0 - 10% EtOAc in pet ether) to afford 1-benzyl 2-methyl 4-(4- (benzyloxy)phenyl)piperazine-1,2-dicarboxylate (2.2 g, 8.90 mmol, 40% yield) as off- white solid. LC-MS, [M+H]+= 461.1, (Method F, tR= 3.37 min).1H NMR (300MHz, CDCl3): δ ppm 7.48 - 7.29 (m, 10H), 6.97 - 6.84 (m, 4H), 5.27 - 5.16 (m, 2H), 5.07 - 5.00 (m, 2H), 4.96 - 4.77 (m, 1H), 4.16 - 3.93 (m, 2H), 3.77 (s, 3H), 3.51 - 3.23 (m, 2H), 2.93 - 2.65 (m, 2H). (Mixture of rotamers). |
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