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Chemical Structure| 126937-43-7 Chemical Structure| 126937-43-7

Structure of 126937-43-7

Chemical Structure| 126937-43-7

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CAS No.: 126937-43-7

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Product Details of [ 126937-43-7 ]

CAS No. :126937-43-7
Formula : C14H18N2O4
M.W : 278.30
SMILES Code : O=C(N1C(C(OC)=O)CNCC1)OCC2=CC=CC=C2
MDL No. :MFCD04115344
InChI Key :HOLPEQRNMJTIIX-UHFFFAOYSA-N
Pubchem ID :14751355

Safety of [ 126937-43-7 ]

GHS Pictogram:
Signal Word:Warning
Hazard Statements:H302-H315-H319-H335
Precautionary Statements:P261-P305+P351+P338

Computational Chemistry of [ 126937-43-7 ] Show Less

Physicochemical Properties

Num. heavy atoms 20
Num. arom. heavy atoms 6
Fraction Csp3 0.43
Num. rotatable bonds 6
Num. H-bond acceptors 5.0
Num. H-bond donors 1.0
Molar Refractivity 79.43
TPSA ?

Topological Polar Surface Area: Calculated from
Ertl P. et al. 2000 J. Med. Chem.

67.87 ?2

Lipophilicity

Log Po/w (iLOGP)?

iLOGP: in-house physics-based method implemented from
Daina A et al. 2014 J. Chem. Inf. Model.

2.77
Log Po/w (XLOGP3)?

XLOGP3: Atomistic and knowledge-based method calculated by
XLOGP program, version 3.2.2, courtesy of CCBG, Shanghai Institute of Organic Chemistry

0.92
Log Po/w (WLOGP)?

WLOGP: Atomistic method implemented from
Wildman SA and Crippen GM. 1999 J. Chem. Inf. Model.

-0.14
Log Po/w (MLOGP)?

MLOGP: Topological method implemented from
Moriguchi I. et al. 1992 Chem. Pharm. Bull.
Moriguchi I. et al. 1994 Chem. Pharm. Bull.
Lipinski PA. et al. 2001 Adv. Drug. Deliv. Rev.

0.76
Log Po/w (SILICOS-IT)?

SILICOS-IT: Hybrid fragmental/topological method calculated by
FILTER-IT program, version 1.0.2, courtesy of SILICOS-IT, http://www.silicos-it.com

0.86
Consensus Log Po/w?

Consensus Log Po/w: Average of all five predictions

1.03

Water Solubility

Log S (ESOL):?

ESOL: Topological method implemented from
Delaney JS. 2004 J. Chem. Inf. Model.

-1.97
Solubility 2.97 mg/ml ; 0.0107 mol/l
Class?

Solubility class: Log S scale
Insoluble < -10 < Poorly < -6 < Moderately < -4 < Soluble < -2 Very < 0 < Highly

Very soluble
Log S (Ali)?

Ali: Topological method implemented from
Ali J. et al. 2012 J. Chem. Inf. Model.

-1.93
Solubility 3.26 mg/ml ; 0.0117 mol/l
Class?

Solubility class: Log S scale
Insoluble < -10 < Poorly < -6 < Moderately < -4 < Soluble < -2 Very < 0 < Highly

Very soluble
Log S (SILICOS-IT)?

SILICOS-IT: Fragmental method calculated by
FILTER-IT program, version 1.0.2, courtesy of SILICOS-IT, http://www.silicos-it.com

-2.83
Solubility 0.41 mg/ml ; 0.00147 mol/l
Class?

Solubility class: Log S scale
Insoluble < -10 < Poorly < -6 < Moderately < -4 < Soluble < -2 Very < 0 < Highly

Soluble

Pharmacokinetics

GI absorption?

Gatrointestinal absorption: according to the white of the BOILED-Egg

High
BBB permeant?

BBB permeation: according to the yolk of the BOILED-Egg

No
P-gp substrate?

P-glycoprotein substrate: SVM model built on 1033 molecules (training set)
and tested on 415 molecules (test set)
10-fold CV: ACC=0.72 / AUC=0.77
External: ACC=0.88 / AUC=0.94

No
CYP1A2 inhibitor?

Cytochrome P450 1A2 inhibitor: SVM model built on 9145 molecules (training set)
and tested on 3000 molecules (test set)
10-fold CV: ACC=0.83 / AUC=0.90
External: ACC=0.84 / AUC=0.91

No
CYP2C19 inhibitor?

Cytochrome P450 2C19 inhibitor: SVM model built on 9272 molecules (training set)
and tested on 3000 molecules (test set)
10-fold CV: ACC=0.80 / AUC=0.86
External: ACC=0.80 / AUC=0.87

No
CYP2C9 inhibitor?

Cytochrome P450 2C9 inhibitor: SVM model built on 5940 molecules (training set)
and tested on 2075 molecules (test set)
10-fold CV: ACC=0.78 / AUC=0.85
External: ACC=0.71 / AUC=0.81

No
CYP2D6 inhibitor?

Cytochrome P450 2D6 inhibitor: SVM model built on 3664 molecules (training set)
and tested on 1068 molecules (test set)
10-fold CV: ACC=0.79 / AUC=0.85
External: ACC=0.81 / AUC=0.87

No
CYP3A4 inhibitor?

Cytochrome P450 3A4 inhibitor: SVM model built on 7518 molecules (training set)
and tested on 2579 molecules (test set)
10-fold CV: ACC=0.77 / AUC=0.85
External: ACC=0.78 / AUC=0.86

No
Log Kp (skin permeation)?

Skin permeation: QSPR model implemented from
Potts RO and Guy RH. 1992 Pharm. Res.

-7.34 cm/s

Druglikeness

Lipinski?

Lipinski (Pfizer) filter: implemented from
Lipinski CA. et al. 2001 Adv. Drug Deliv. Rev.
MW ≤ 500
MLOGP ≤ 4.15
N or O ≤ 10
NH or OH ≤ 5

0.0
Ghose?

Ghose filter: implemented from
Ghose AK. et al. 1999 J. Comb. Chem.
160 ≤ MW ≤ 480
-0.4 ≤ WLOGP ≤ 5.6
40 ≤ MR ≤ 130
20 ≤ atoms ≤ 70

None
Veber?

Veber (GSK) filter: implemented from
Veber DF. et al. 2002 J. Med. Chem.
Rotatable bonds ≤ 10
TPSA ≤ 140

0.0
Egan?

Egan (Pharmacia) filter: implemented from
Egan WJ. et al. 2000 J. Med. Chem.
WLOGP ≤ 5.88
TPSA ≤ 131.6

0.0
Muegge?

Muegge (Bayer) filter: implemented from
Muegge I. et al. 2001 J. Med. Chem.
200 ≤ MW ≤ 600
-2 ≤ XLOGP ≤ 5
TPSA ≤ 150
Num. rings ≤ 7
Num. carbon > 4
Num. heteroatoms > 1
Num. rotatable bonds ≤ 15
H-bond acc. ≤ 10
H-bond don. ≤ 5

0.0
Bioavailability Score?

Abbott Bioavailability Score: Probability of F > 10% in rat
implemented from
Martin YC. 2005 J. Med. Chem.

0.55

Medicinal Chemistry

PAINS?

Pan Assay Interference Structures: implemented from
Baell JB. & Holloway GA. 2010 J. Med. Chem.

0.0 alert
Brenk?

Structural Alert: implemented from
Brenk R. et al. 2008 ChemMedChem

1.0 alert: heavy_metal
Leadlikeness?

Leadlikeness: implemented from
Teague SJ. 1999 Angew. Chem. Int. Ed.
250 ≤ MW ≤ 350
XLOGP ≤ 3.5
Num. rotatable bonds ≤ 7

No; 1 violation:MW<0.0
Synthetic accessibility?

Synthetic accessibility score: from 1 (very easy) to 10 (very difficult)
based on 1024 fragmental contributions (FP2) modulated by size and complexity penaties,
trained on 12'782'590 molecules and tested on 40 external molecules (r2 = 0.94)

3.01

Application In Synthesis of [ 126937-43-7 ]

* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.

  • Downstream synthetic route of [ 126937-43-7 ]

[ 126937-43-7 ] Synthesis Path-Downstream   1~16

  • 1
  • methyl phosphite [ No CAS ]
  • [ 126937-43-7 ]
  • [ 100-52-7 ]
  • [ 705966-33-2 ]
  • 2-methyl 1-phenylmethyl 4-<(dimethoxyphosphinyl)phenylmethyl>-1,2-piperazinedicarboxylate [ No CAS ]
  • 2
  • [ 50-00-0 ]
  • [ 126937-43-7 ]
  • [ 705966-33-2 ]
  • 3
  • [ 126937-42-6 ]
  • [ 126937-43-7 ]
YieldReaction ConditionsOperation in experiment
Intermediate 21 : 2-Methyl-1-(phenylmethyl) 1,2-piperazinedicarboxylate. 2-Methyl 1-(phenylmethyl) 1 ,2-piperazinedicarboxylate was prepared from the corresponding TFA salt (whose preparation is already known in literature eg. in Journal of Medicinal Chemistry (1990), 33(10), 2916-24 or Tetrahedron Letters (1989), 30(39), 5193-6.) To a DCM solution (5ml) of (4-(1,1 -dimethylethyl) 2-methyl 1-(phenylmethyl) 1 ,2,4-piperazinetricarboxylate (500mg) was added, at 00C, TFA (3ml) and the reaction temperature allowed to slowly reach 200C. After complete conversion of the starting material DCM was evaporated, the crude was dissolved in water and extracted with Et2O; then the water phase was basified (pH>9) with solid NaOH and extracted with DCM, the organic layer dried over Na2SO4 and the solvent evaporated to give a colourless oil (92 mg);UPLC RT=0.47; m/z (ES): 279.1 [M+H]+; H NMR (400 MHz, CHLOROFORM-d) δ ppm 7.29 - 7.45 (m, 5 H) 5.09 - 5.25 (m, 2 H) 4.60 - 4.83 (m, 2 H) 3.85 - 4.05 (m, 1 H) 3.69 - 3.84 (m, 3 H) 3.44 - 3.63 (m, 1 H) 2.87 - 3.33 (m, 3 H) 2.65 - 2.84 (m, 1 H).
  • 4
  • [ 126937-43-7 ]
  • 4-methylpiperazine-2-carboxylic acid methyl ester dihydrochloride [ No CAS ]
  • 5
  • [ 126937-43-7 ]
  • 4-(phosphonophenylmethyl)-2-piperazinecarboxylic acid hydrobromide [ No CAS ]
  • 6
  • [ 126937-43-7 ]
  • 4-(Phenyl-phosphono-methyl)-piperazine-2-carboxylic acid [ No CAS ]
  • 7
  • (+)-5',11'-dihydro-3H-spiro[cyclopentane-1,10'-dibenzo[a,d]cyclohepten]-3-one [ No CAS ]
  • [ 126937-43-7 ]
  • [ 1111640-71-1 ]
YieldReaction ConditionsOperation in experiment
Intermediate 38: 2-Methyl 1-(phenylmethyl) 4-(5',11 '-dihydrospiro[cvclopentane-1 ,10'- dibenzo[a,d]cvclohepten]-3-yl)-1,2-piperazinedicarboxylate. To a solution of (+) 5',11 '-dihydro-3H-spiro[cyclopentane-1 ,10'-dibenzo[a,d]cyclohepten]- 3-one (Intermediate 7, 60 mg, 0.229 mmol) and 2-methyl 1-(phenylmethyl) 1 ,2- piperazinedicarboxylate (Intermediate 21 , 76 mg, 0.274 mmol) in DCE (4 ml) under nitrogen was added AcOH (0.026 ml, 0.457 mmol). The reaction was stirred at room temperature for 1 h and then NaBH(OAc)3 (72.7 mg, 0.343 mmol) was added and the resulting mixture was stirred overnight. The mixture was diluted with DCM. Organic phase was washed with NaHCOβ sat. sol., brine and concentrated under vacuum. The crude mixture was purified through SiO2 (redisep Catridge 12 g) using cyclohexane: EtOAc (From 100 : 00 to 80 : 20 for 25 min and 80 : 20 for 40 min) to afford title compound (106 mg, 0.202 mmol) as a mixture of two diastereoisomeric racemates.For the major diastereoisomer: 1H NMR (400 MHz, CHLOROFORM-c/) d ppm 7.43-6.98 (m, 8 H); 5.26-5.13 (m, 2 H); 4.61-4.88 (m, 1 H); 4.24-4.01 (m, 2 H); 3.84-3.62 (m, 3 H); 3.48-2.74 (m, 7 H); 2.32-1.75 (m, 10 H); 1.45 (s, 3 H).
  • 8
  • [ 1111640-44-8 ]
  • [ 126937-43-7 ]
  • [ 1111640-71-1 ]
  • 9
  • [ 201940-08-1 ]
  • [ 126937-43-7 ]
  • O1-benzyl 02-methyl 4-(2-tert-butoxycarbonylisoindolin-5-yl)piperazine-1,2-dicarboxylate [ No CAS ]
YieldReaction ConditionsOperation in experiment
420 mg With (2-dicyclohexylphosphino-2’,4’,6’-triisopropyl-1,1 ‘-biphenyl)[2-(2’-amino-1,1‘-biphenyl)]palladium(II) methanesulfonate; caesium carbonate; In 1,4-dioxane; at 100℃; for 12.0h;Inert atmosphere; To a solution of ferf-butyl 5-bromoisoindoline-2-carboxylate (compound 15a, 1.12 g, 3.75 mmol) in l,4-dioxane (10 mL) was added Ol-benzyl 02-methyl piperazine- l,2-dicarboxylate (CAS: 126937-43-7, Vendor: BePharm, 950 mg, 3.41 mmol), CS2CO3 (1.67 g, 5.12 mmol) and XPhos Pd G3 (289 mg, 0.34 mmol). The mixture was stirred at 100 C under N2 for 12 hrs. After being cooled down, the mixture was filtered and concentrated. The residue was diluted with EtOAc (10 mL) and washed with water (3 mL) and brine (3 mL), dried over anhydrous Na2S04, concentrated to give a cmde product which was purified by flash column (PE/EtOAc = 3/1) to give compound 15b (420 mg) as a yellow oil. MS: calc’d 496 (MH+), measured 496 (MH+).
  • 10
  • [ 201940-08-1 ]
  • [ 126937-43-7 ]
  • tert-butyl 5-[4-benzyloxycarbonyl-3-(hydroxymethyl)piperazin-1-yl]isoindoline-2-carboxylate [ No CAS ]
  • 11
  • [ 126937-43-7 ]
  • 7-(4-(benzyloxy)phenyl)tetrahydro-1H-oxazolo[3,4-a]pyrazin-3(5H)-one [ No CAS ]
  • 12
  • [ 126937-43-7 ]
  • (4-(4-(benzyloxy)phenyl)piperazin-2-yl)methanol [ No CAS ]
  • 13
  • [ 126937-43-7 ]
  • tert-butyl 4-(4-(benzyloxy)phenyl)-2-(hydroxymethyl)piperazine-1-carboxylate [ No CAS ]
  • 14
  • [ 126937-43-7 ]
  • C23H30N2O4 [ No CAS ]
  • C23H30N2O4 [ No CAS ]
  • 15
  • [ 126937-43-7 ]
  • tert-butyl 2-(hydroxymethyl)-4-(4-hydroxyphenyl)piperazine-1-carboxylate [ No CAS ]
  • 16
  • [ 126937-43-7 ]
  • [ 146631-00-7 ]
  • 1-benzyl 2-methyl 4-(4-(benzyloxy)phenyl)piperazine-1,2-dicarboxylate [ No CAS ]
YieldReaction ConditionsOperation in experiment
40% With pyridine; oxygen; In dichloromethane; at 20℃; for 48.0h;Molecular sieve; A mixture of <strong>[126937-43-7]1-benzyl 2-methyl piperazine-1,2-dicarboxylate</strong> (2 g, 7.19 mmol), (4-(benzyloxy)phenyl)boronic acid (3.3 g, 14.37 mmol) and copper (II) acetate (1.30 g, 7.19 mmol) in dichloromethane (60 mL) was added pyridine (1.2 mL, 14.37 mmol) and 2 g of 4A molecular sieves. The reaction mixture was stirred at room temperature for 48 h under oxygen atmosphere. The resulting suspension was filtered through Celite pad, washed with 50 mL of dichloromethane and filtrate was evaporated under reduced pressure to give the crude residue. The crude residue was purified by flash chromatography (0 - 10% EtOAc in pet ether) to afford 1-benzyl 2-methyl 4-(4- (benzyloxy)phenyl)piperazine-1,2-dicarboxylate (2.2 g, 8.90 mmol, 40% yield) as off- white solid. LC-MS, [M+H]+= 461.1, (Method F, tR= 3.37 min).1H NMR (300MHz, CDCl3): δ ppm 7.48 - 7.29 (m, 10H), 6.97 - 6.84 (m, 4H), 5.27 - 5.16 (m, 2H), 5.07 - 5.00 (m, 2H), 4.96 - 4.77 (m, 1H), 4.16 - 3.93 (m, 2H), 3.77 (s, 3H), 3.51 - 3.23 (m, 2H), 2.93 - 2.65 (m, 2H). (Mixture of rotamers).
40% With pyridine; oxygen; In dichloromethane; at 20℃; for 48.0h;Molecular sieve; A mixture of <strong>[126937-43-7]1-benzyl 2-methyl piperazine-1,2-dicarboxylate</strong> (2 g, 7.19 mmol), (4-(benzyloxy)phenyl)boronic acid (3.3 g, 14.37 mmol) and copper (II) acetate (1.30 g, 7.19 mmol) in dichloromethane (60 mL) was added pyridine (1.2 mL, 14.37 mmol) and 2 g of 4A molecular sieves. The reaction mixture was stirred at room temperature for 48 h under oxygen atmosphere. The resulting suspension was filtered through Celite pad, washed with 50 mL of dichloromethane and filtrate was evaporated under reduced pressure to give the crude residue. The crude residue was purified by flash chromatography (0 - 10% EtOAc in pet ether) to afford 1-benzyl 2-methyl 4-(4- (benzyloxy)phenyl)piperazine-1,2-dicarboxylate (2.2 g, 8.90 mmol, 40% yield) as off- white solid. LC-MS, [M+H]+= 461.1, (Method F, tR= 3.37 min).1H NMR (300MHz, CDCl3): δ ppm 7.48 - 7.29 (m, 10H), 6.97 - 6.84 (m, 4H), 5.27 - 5.16 (m, 2H), 5.07 - 5.00 (m, 2H), 4.96 - 4.77 (m, 1H), 4.16 - 3.93 (m, 2H), 3.77 (s, 3H), 3.51 - 3.23 (m, 2H), 2.93 - 2.65 (m, 2H). (Mixture of rotamers).
 

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